Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04955 598 / 0 ATALN allantoinase (.1) AT5G12200 53 / 3e-07 PYD2 pyrimidine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025648 [exp] 727 / 0 AT4G04955 716 / 0.0 allantoinase (.1) Lus10026817 [exp] 57 / 3e-08 AT5G12200 882 / 0.0 pyrimidine 2 (.1) Lus10036064 [exp] 52 / 5e-07 AT5G12200 776 / 0.0 pyrimidine 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041800 [exp] 629 / 0 AT4G04955 669 / 0.0 allantoinase (.1) Potri.009G067700 [exp] 65 / 5e-11 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.001G273400 [exp] 63 / 2e-10 AT5G12200 857 / 0.0 pyrimidine 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10018186 pacid=23145269 polypeptide=Lus10018186 locus=Lus10018186.g ID=Lus10018186.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTTCCCCTTGCTAGCTCTCCTCGCTTCCTTCCTCTACTTCTTCCACTTCCACAGCTTCCTCAAGGCAAGGGCGGTTCTAGGACGGGGAAAG TGATTGATTATGGAGAGGCAGTGGTAATGCCTGGATTGGTTGATGTACATGCTCATCTTGATGATCCAGGACGAGCTGAGTGGGAAGGGTTTCCTTCTGG TACTAAAGCAGCTGCTGCAGGTGGTATTACAACGTTGATCGATATGCCACTGAATAGTTTTCCATCAACTGTTTCGACTGAGACTCTTAGACTCAAGACG CAAGCTGCAGCAAATAACTTATACGTTGATGTGGGTTTCTGGGGCGGACTTGTTCCTGAGAACGCTTTCAATGCTACATCCCTTGAAGCTCTTCTAAGTG CTGGTGCCCTTGGGCTCAAGTCTTTCATGTGCCCTTCAGGGATCAATGATTTCCCCATGACTAATGCCAGTCACATCAAGGCAGGACTAGCAGTCCTAGC AAAATACAGAAGGCCATTGCTTGTACATGCGGAGAAGGAGCAAGATTTAGAAACGCCCTTAACAGACGGTGAAATCGACCCTCCAACTTCTAACCACCAA GCTGCTGCTACTATCTCCTGGACTAGGGAGGAGGCAGCCATTAGAGATCTCTTGACAGTGTCTGGAGACACGAGACCCGGTGGCCCTGCAGAAGGAGCTC ATCTTCACGTTGTCCATTTGTCAGATGCAGGTTCTTCACTAGAGCTTCTAAAGCAAGCAAAAGCTAGCGGCGATAGTTTAACTGTTGAGACGTGTCCTCA TTACCTTGCTTTCTCGTGGGAAGAAATTGAAGATGGAGATACTCGTTTCAAATGTTCTCCACCAATCCGTGATGCAGGAAACAAGGAAACGCTCTGGCAA GCCTTGCTGGAAGGAGACATAGACATGCTAAGTTCTGATCATTCCCCTACTGTTCCAGAGCTCAAGCTCCCTGAAGAAGGCAATTTCTTGAAGGCTTGGG GCGGTATATCATCTTTGCAGTATGTTCTTCCTGTGACATGGTCACATGGACGTAAGTACGGAGTAAGTCTTGAACAAGTGGCATCATGGTGGAGTGAAAG ACCTGCTAAGCTCGCCGGCCTAGATTCGAAGGGAGCAATTGCAGTGGGGAAACAAGCAGACATTGCAGTATGGGAACCAGATGCCGAATTCGTCCTCAAC GATGATCATCCAGCATTCGTCAAGCACCCAAGTATCTCAGCATACATGGGGGCAAAGCTGTCTGGGAAGGTATTGGCAACTTTCGTCAGAGGAAACCTCG TCTACGAAACTGGGAAGCACGCTTCTTCAGCCTGTGGCACTACTCTTCTCGGTACTGCTCTCTAA
AA sequence Show only first row Show all	>Lus10018186 pacid=23145269 polypeptide=Lus10018186 locus=Lus10018186.g ID=Lus10018186.BGIv1.0 annot-version=v1.0 MAALPLASSPRFLPLLLPLPQLPQGKGGSRTGKVIDYGEAVVMPGLVDVHAHLDDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNSFPSTVSTETLRLKT QAAANNLYVDVGFWGGLVPENAFNATSLEALLSAGALGLKSFMCPSGINDFPMTNASHIKAGLAVLAKYRRPLLVHAEKEQDLETPLTDGEIDPPTSNHQ AAATISWTREEAAIRDLLTVSGDTRPGGPAEGAHLHVVHLSDAGSSLELLKQAKASGDSLTVETCPHYLAFSWEEIEDGDTRFKCSPPIRDAGNKETLWQ ALLEGDIDMLSSDHSPTVPELKLPEEGNFLKAWGGISSLQYVLPVTWSHGRKYGVSLEQVASWWSERPAKLAGLDSKGAIAVGKQADIAVWEPDAEFVLN DDHPAFVKHPSISAYMGAKLSGKVLATFVRGNLVYETGKHASSACGTTLLGTAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04955		ATALN	allantoinase (.1)		Lus10018186 [exp]	0	1
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	9.8	0.9244
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	10.0	0.9145
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	12.5	0.9109
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	13.9	0.9082
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	18.3	0.9092
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	22.4	0.9005
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	22.5	0.8959
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	25.5	0.9079
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	26.4	0.9100
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	26.5	0.8826

Compare expression of checked genes

Lus10018186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.