Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65070 890 / 0 DNA mismatch repair protein MutS, type 2 (.1.2) AT5G54090 275 / 1e-79 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 94 / 3e-19 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT4G25540 78 / 3e-14 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 75 / 2e-13 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 70 / 5e-12 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24495 69 / 1e-11 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G17380 67 / 4e-11 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 56 / 1e-07 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025647 [exp] 1737 / 0 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10032917 [exp] 247 / 3e-69 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10015589 [exp] 231 / 3e-63 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10014462 [exp] 89 / 1e-17 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10023718 [exp] 85 / 2e-16 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10017724 [exp] 82 / 1e-15 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 81 / 5e-15 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10027452 [exp] 77 / 2e-14 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 75 / 2e-13 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041900 [exp] 1134 / 0 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.012G005000 [exp] 255 / 4e-72 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.010G065000 [exp] 91 / 3e-18 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.015G142900 [exp] 74 / 4e-13 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 72 / 1e-12 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 69 / 9e-12 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G156314 [exp] 69 / 2e-11 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 69 / 2e-11 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 67 / 4e-11 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 53 / 9e-07 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01713 [flax] [poplar] Smr Smr domain CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10018187 pacid=23145236 polypeptide=Lus10018187 locus=Lus10018187.g ID=Lus10018187.BGIv1.0 annot-version=v1.0 ATGGAAATCCTCACTCATTTCCTCTCCACCAAAGCTTCCCCGCTCATCTTCCACCACCATCATCGCCCTCTCAAAACCTCACCAAAACCTCTCCGTTCCT TCTCCTCCTTCACCACCATCCACTCACAGCTTGCTCTCCCAAACTCTCTCCAATCCGACACTCTGCAAGCTCTAGAATGGGACTCCCTCTGCGCTCACCT CGCTCGCTTCACTTCCACTTCCACTGCCCGCTCAGTCGCTCAGCGAGCAATCATTCCCATCGGATCCTCCCCAGAAGAGAGCCAGAAGCTCCTCGACCAG ACCGCCGCAGCAATCTCCGTCATGAATTCTGGACCGCCGCTGGACCTCTCTCAGTTCCAGGACATCACAGAAATCGTCGATTCCGCCGTCTCCGGGACTC TGCTCACCGTCAGGGAGCTATGCGCCGTCAGGAGGACGTTGATTGCAGCGAGAACGGTAGCAGAGCGGTTGATTCAGAGCGATGGTGGCTCGAATAGGAT TGGCTCTCTGCTTGAAATAATTCACGGTTGCGATTTCCAATCAGAACTGGAGCAGAAAATAGGGTTTTGTATAGACTGCAATCTCCTGGTAATCCTCGAC AGGGCAAGTGAGGAATTAGAGATGATAAGGTCAGAGAGAAAGAAGAACATGGAGAATATGGAAGCATTGCTAAAGGCTGTATCTACCAAAGTTTTCCAGG GTGGTGGCATTGATAGGCCTTTGGTAACCAAGCGCCGTAGTAGGTTCTGTGTTGGAGTTAGAGCTACTCACAGGCGCTTAGTTCCAGGTGGCGTGGTACT AGATGTCAGTAGCTCTGGTGCAACGTACTACATGGAGCCTGGTGAGGCTGTGGAGTTGAATAACTTGGAAGTCACGCTTTCTAACTCTGAGAAAGAAGAG GAAATGGCCATTTTGAGCATGCTTACTGCGGAGATAGCGGAATCAGAAAGGGGAATCAAATATTTGTTGGATTGTATTTTGGCAATTGATCTTGCTTTTG CTAGAGCTGGGTATTCACAGTGGATGAATGGGGTGTGCCCAATTATTACATCAGAAACGTGCTCAGCTGGCTATTTAGGTGACATATACGATCAGTTGTT TGTTGATATTGAAGGCATACAGCATCCATTGCTTCTAGCTAAACGAGAGAATTCATTTGAACAGGATGGTGGAAATGGTATAGTGGACAAAGGAAGTATT TTGGAACGCCAACCTGACTTTCCTGTGCCGATAAACATCAAAGTGAAATGTGGAACCAGGGTGGTCGTTATCTCTGGCCCTAACACCGGTGGGAAAACCG CTTCAATGAAAACCCTGGGTGTGGCATCTCTCATGTCCAAGGCTGGCTTGTATTTGCCTGCTAAGAATGCCCCAAAGTTGCCCTGGTTTGATCTAGTTCT GGCAGATATAGGGGACCATCAGTCTTTAGAACAAAGCCTTTCGACTTTTAGTGGGCACATATCTCGAATCTGCAACATCTTGGAAGTTGCTTCAGAACAA TCCCTTGTGCTCATTGATGAGATCTGCAGTGGAACTGATCCATCTGAAGGAGTGGCTCTCTCAGCAAGCATCTTGAAATATCTAGGAAATAGGGTCAACT TGGCAGTTGTGACAACTCATTATGCCGATCTCAGTCTTCTCAAAGAAAAGGATGCTAGATTTGAGAATGCAGCAATGGAGTTTTGTCTTAAAACCTTGCA ACCAACCTACCAAGTTCTCTGGGGAAGCACTGGTGAATCAAATGCATTAAGCATTGCCAAATCTATTGGTTTTGACATCAATATAATTGAACGTGCACAA AAGTGGCTGGATAAGTTACGGCCTGAAATGCAGCAGGAGCGTAGAGGCTTGCTTTATGAATCGCTAGTGAAGGAAAGAAGCCGATTAAAGGCTGAGGCTG CGAAATCTGCATCTTTGCATGCAGAAACTATGGAGATCTATAATGAGCTTAACTTTTTCCTGTCTTTTTCCACCATGGACTCCCCAATCAAGCTTCGAGA GGAAGCAGATGAACTTGACAAGCGTGTGGTAGTTCTCATGGCAAAGGAAACTCAACAGGCTCGACAGGAAGTGAATGCCGTGAAGTCTGAAATCCAAGTC GTGATGCAGGATTTCGATAACCTACTCAGAATAACCATCCCTGAACAGTACAATACACTGATAAGGAAGTCAGAAGATAGAATTGCATCCATTGTAGAAG TTCATAGCCCTGCTTCTGGTCTCCCTGGCAGTGAAACAAATAGCAGGTCTTATACCCCGCAGCTTGGAGAGAGAGTCCTAGTGAAGTCATTGGGAGGTAA GATGGCTACTGTGGTTGAAGCACCGGGAGATGATGATGTAGTTTTGGTTCAATACGGTAAAATCAAAGTCCGAGTAAAGAAAACCGAGATAAGAGCTACT CGAGGTACTACGAAGAGCAGCAGCGCGTCTAATTTGACGAGACTGGTGAAGAAGAGGCAGCAGATCGACTCAGAGTCACAGACTGAGGAACCAAAGGAGG GTTATAGCGCTCGCGTGCAAACATCGAGAAACACAGTGGATCTCCGAGGGATGAGAGTAGAAGCAGCAGCTCTGCACCTCACTGCAGCCATAGCTGATAG AGAGGCACAGTCGGTTATCTTTGTTGTACACGGGACAGGAACCGGAGCTGTTAAGAAGCGGACGCTTGAGATATTAGCTGAGCATCCGCGTGTGACTAAA TATGAACCAGAGAGTCCAACAAACTGGGGCTGCACAGTTGCTTATATAAAATGA
AA sequence Show only first row Show all	>Lus10018187 pacid=23145236 polypeptide=Lus10018187 locus=Lus10018187.g ID=Lus10018187.BGIv1.0 annot-version=v1.0 MEILTHFLSTKASPLIFHHHHRPLKTSPKPLRSFSSFTTIHSQLALPNSLQSDTLQALEWDSLCAHLARFTSTSTARSVAQRAIIPIGSSPEESQKLLDQ TAAAISVMNSGPPLDLSQFQDITEIVDSAVSGTLLTVRELCAVRRTLIAARTVAERLIQSDGGSNRIGSLLEIIHGCDFQSELEQKIGFCIDCNLLVILD RASEELEMIRSERKKNMENMEALLKAVSTKVFQGGGIDRPLVTKRRSRFCVGVRATHRRLVPGGVVLDVSSSGATYYMEPGEAVELNNLEVTLSNSEKEE EMAILSMLTAEIAESERGIKYLLDCILAIDLAFARAGYSQWMNGVCPIITSETCSAGYLGDIYDQLFVDIEGIQHPLLLAKRENSFEQDGGNGIVDKGSI LERQPDFPVPINIKVKCGTRVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNAPKLPWFDLVLADIGDHQSLEQSLSTFSGHISRICNILEVASEQ SLVLIDEICSGTDPSEGVALSASILKYLGNRVNLAVVTTHYADLSLLKEKDARFENAAMEFCLKTLQPTYQVLWGSTGESNALSIAKSIGFDINIIERAQ KWLDKLRPEMQQERRGLLYESLVKERSRLKAEAAKSASLHAETMEIYNELNFFLSFSTMDSPIKLREEADELDKRVVVLMAKETQQARQEVNAVKSEIQV VMQDFDNLLRITIPEQYNTLIRKSEDRIASIVEVHSPASGLPGSETNSRSYTPQLGERVLVKSLGGKMATVVEAPGDDDVVLVQYGKIKVRVKKTEIRAT RGTTKSSSASNLTRLVKKRQQIDSESQTEEPKEGYSARVQTSRNTVDLRGMRVEAAALHLTAAIADREAQSVIFVVHGTGTGAVKKRTLEILAEHPRVTK YEPESPTNWGCTVAYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	0	1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10022263 [exp]	1.0	0.8751
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	2.4	0.8580
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	2.8	0.8678
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	7.5	0.8435
AT4G24810			Protein kinase superfamily pro...		Lus10032628 [exp]	9.2	0.7775
AT5G55060			unknown protein		Lus10000118 [exp]	9.2	0.7931
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	16.3	0.7992
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	22.6	0.8192
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	23.0	0.7830
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	23.2	0.8138

Compare expression of checked genes

Lus10018187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.