Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15390 229 / 2e-69 SDE5 silencing defective 5 (.1.2) AT5G58720 98 / 1e-21 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025646 [exp] 532 / 0 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2) Lus10018236 [exp] 95 / 2e-20 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10040668 [exp] 91 / 3e-19 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051300 [exp] 357 / 2e-118 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.004G042100 [exp] 343 / 6e-113 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.001G401900 [exp] 258 / 6e-80 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.009G046300 [exp] 105 / 4e-24 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Lus10018188 pacid=23145233 polypeptide=Lus10018188 locus=Lus10018188.g ID=Lus10018188.BGIv1.0 annot-version=v1.0 ATGGAGGTCGCTTCTTGTAATGTCCCAACGTACGATGATGAGGAGAAGGCACTAGCAGTTTTGCTTGATGCATTCGGTTCGCTGTTTTCTCTTGAACAGA TTGCTTCTGCTTACTGCAAGGCTGGTCGAGATCCAAATTTGGTTGGTCAGCTCTTGTATGATTCGCAGGGAACTTCGTCGAGCTCTTCGCACTGTGAACC TATCAAAGAGGAGATCGATGGAAACGGTTCTGTGTCATCCAGTAGTACTTCTGCAAGGATATCAAGTGACGGTGATCTAAGGATTAGAGCTCCAAAGCAA AAAGGGCGTCCGGTTTCTGCAGGCACGGTTTCAAGTTTTCTTGGTAAAGACTATACCAAGTCCAGACCTTTGGTGAATGGCTCATCTATGGCGCCAAAGC CATTGAAACTGGATGCAGATGAGTGGCTTGTACCCGATGATGGAGGAGAGCAGATTGATAAGCCGAGTCGATCGGTGAATGGAAATATGCAAGAGAACAT GGTGGAATTTCTCTTCAAAATGCTTGGAAATGGCTCCCAGATGGAACGAGAGGTGATCCGTGATGTTCTAGATAAATGTGGATACGACATGCAAGCGGGC ATGGAGAATTTAATTCATCTATCAGATATTACATCAGAAAGAAATGACAAGCGTCTTCGTGAAACTATGGAAAAGCTCTCAAAAGCAGGTTTAAAAAATG AAGTACCTTGTCAAGGTGTAAATCAACAACAGGATTGTTCAGAAAGTGACTTCGCTTTGCAAAAGAGAAATGATCTCCAGAAGGAAGTCTTAGCTGCACT TTTCGCCGCTCCTCAAAGAGTCGAGGAGCCTCCTAAAAGAATAGTAAGGCCTCCAAGGAGGGCTGTACTTTTTTCATGTGACGCAGTACACGATCCTCCC CGTGAGGTTATGGTTAGTAAACCAATTGAAGCACAAGCAGTGACAGGTGTTGATAATGTTGCAGCTAAATCAGAAGTTGCTGAAGTAGAGGACGAGTATC AGCGGCTTCGCAGGGTAGTGATGGAGAGTCGAGTAACCATGAAAGAATATTACATATCTTCTGTTGAAGCTTTTACCAAGGGAGACTATGAGAAAGCAGA CAGATTAATGGAAAAGGGAGATTTTTTCCGCAACAAGGCCCAACAAGCTGACGATGAATCCGAAAGCAAGCTCTTCGAAACCAAATATGCAGAGACAGAA GACCAGGTGCAGATCGATTTACATGAGCATGACACCAAGGATGCAATAAGCTTTTTGAAGCTTCATCTCTCGAAACTTTCAGGCATCTCATCTATCAAAT ACTTGAAGGTAATCGTCGAGACTAATGAGGAGGACACAACGAAAGGGAAGCGTAAAAGAACTATCAAGAAATTCCTGGATAGAGAGTCGATCAGCTGGAC AGAAGAGGAGGCGAGACCTGGGATAATACTGGTTCGAGTGGACAATGTCGACAGGAGTAAATTGAGTTTCCCCAAGAACTCAATTTAA
AA sequence Show only first row Show all	>Lus10018188 pacid=23145233 polypeptide=Lus10018188 locus=Lus10018188.g ID=Lus10018188.BGIv1.0 annot-version=v1.0 MEVASCNVPTYDDEEKALAVLLDAFGSLFSLEQIASAYCKAGRDPNLVGQLLYDSQGTSSSSSHCEPIKEEIDGNGSVSSSSTSARISSDGDLRIRAPKQ KGRPVSAGTVSSFLGKDYTKSRPLVNGSSMAPKPLKLDADEWLVPDDGGEQIDKPSRSVNGNMQENMVEFLFKMLGNGSQMEREVIRDVLDKCGYDMQAG MENLIHLSDITSERNDKRLRETMEKLSKAGLKNEVPCQGVNQQQDCSESDFALQKRNDLQKEVLAALFAAPQRVEEPPKRIVRPPRRAVLFSCDAVHDPP REVMVSKPIEAQAVTGVDNVAAKSEVAEVEDEYQRLRRVVMESRVTMKEYYISSVEAFTKGDYEKADRLMEKGDFFRNKAQQADDESESKLFETKYAETE DQVQIDLHEHDTKDAISFLKLHLSKLSGISSIKYLKVIVETNEEDTTKGKRKRTIKKFLDRESISWTEEEARPGIILVRVDNVDRSKLSFPKNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10018188 [exp]	0	1
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	6.7	0.8236
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	7.7	0.8071
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	7.7	0.8057
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	13.2	0.8226
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	14.0	0.8309
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	24.3	0.8297
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	25.5	0.7665
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	32.9	0.8036
					Lus10021271 [exp]	34.4	0.7938
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	35.7	0.8055

Compare expression of checked genes

Lus10018188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.