Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44760 165 / 3e-52 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 67 / 5e-14 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G03720 66 / 6e-14 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G17390 61 / 2e-11 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 54 / 4e-09 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G13450 47 / 8e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025644 [exp] 214 / 5e-72 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 169 / 1e-53 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10042701 [exp] 165 / 2e-52 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 79 / 2e-18 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10036814 [exp] 57 / 5e-11 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10034661 [exp] 57 / 2e-10 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10007982 [exp] 50 / 7e-08 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10023716 [exp] 40 / 0.0001 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014459 [exp] 40 / 0.0002 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177100 [exp] 152 / 4e-47 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 147 / 6e-45 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 73 / 5e-16 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 72 / 7e-16 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 71 / 2e-15 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 62 / 3e-12 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10018190 pacid=23145172 polypeptide=Lus10018190 locus=Lus10018190.g ID=Lus10018190.BGIv1.0 annot-version=v1.0 ATGGAAGGAATGAGGAGGAAGAGGGTTATGGTGGTGGTGGATGAGAGTTCACATTCGAAGCATGCTTTGATTTGGGCACTTACTCATATGGTTAATCACT CTGATTTGCTCACTCTGCTTCATATAACCACTTCTTCTTCTTATTCTTCCTCTTTGATTGTTGATTCCCTTGCTTCCCTCTGCAAAGCCTGCAACCCTGA GGTGGACGTTGAGGCATTGGTGGTGCAAGGGCCAAAGTTGGGGACAGTAATTAGACAAGTGAAGAAGCTTGATGTTTCTGTTCTTGTTCTTGGTCACAAG AAGCCCTCTTCCTTTACCAGTTGCCTAAGTGGAAGAAGAAGCAGCAGTGAAGAGCTAGTGGAAGAGTGCATAAAGAGTGTGGAGAGGTGCATGATAGTTG GGTTGAGGAAGCAGAGCAATGGCAAGAGTGGCTATCTCATCACTACCAAATGGCAGACGAACTTCTGGCTCTTGGCTTAA
AA sequence Show only first row Show all	>Lus10018190 pacid=23145172 polypeptide=Lus10018190 locus=Lus10018190.g ID=Lus10018190.BGIv1.0 annot-version=v1.0 MEGMRRKRVMVVVDESSHSKHALIWALTHMVNHSDLLTLLHITTSSSYSSSLIVDSLASLCKACNPEVDVEALVVQGPKLGTVIRQVKKLDVSVLVLGHK KPSSFTSCLSGRRSSSEELVEECIKSVERCMIVGLRKQSNGKSGYLITTKWQTNFWLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	2.6	0.9603
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	3.2	0.9598
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	6.7	0.9519
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	6.7	0.9593
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	7.3	0.9272
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	8.5	0.9534
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	10.5	0.9462
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	12.0	0.9493
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	13.3	0.9416
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	14.0	0.9439

Compare expression of checked genes

Lus10018190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.