Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14320 221 / 1e-74 EMB3137 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) AT1G77750 111 / 2e-31 Ribosomal protein S13/S18 family (.1) AT4G09800 41 / 8e-05 RPS18C S18 ribosomal protein (.1) AT1G34030 41 / 8e-05 Ribosomal protein S13/S18 family (.1) AT1G22780 41 / 8e-05 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025642 [exp] 306 / 2e-108 AT5G14320 222 / 4e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10006182 [exp] 132 / 2e-38 AT5G14320 132 / 1e-38 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10037359 [exp] 122 / 1e-35 AT1G77750 141 / 3e-43 Ribosomal protein S13/S18 family (.1) Lus10035785 [exp] 92 / 3e-24 AT1G77750 102 / 7e-29 Ribosomal protein S13/S18 family (.1) Lus10034179 [exp] 43 / 2e-05 AT1G34030 302 / 3e-107 Ribosomal protein S13/S18 family (.1) Lus10014676 [exp] 42 / 3e-05 AT1G34030 303 / 1e-107 Ribosomal protein S13/S18 family (.1) Lus10022057 [exp] 42 / 3e-05 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1) Lus10042603 [exp] 42 / 4e-05 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1) Lus10006914 [exp] 42 / 4e-05 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088300 [exp] 248 / 3e-85 AT5G14320 229 / 5e-78 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.005G172600 [exp] 244 / 7e-84 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.002G088400 [exp] 127 / 2e-37 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1) Potri.005G196600 [exp] 43 / 3e-05 AT4G09800 278 / 2e-96 S18 ribosomal protein (.1) Potri.005G211200 [exp] 42 / 5e-05 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1) Potri.002G051300 [exp] 42 / 5e-05 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10018192 pacid=23145257 polypeptide=Lus10018192 locus=Lus10018192.g ID=Lus10018192.BGIv1.0 annot-version=v1.0 ATGATTCAAAGCCTAGCAATGCCCGCAGCTCCTTCGGTTTCCCTCTTCTGCAACGGACTCAATCGGAGCTCACTCTCCAACTTCGTCTCCCTCCCGCGCC AAAAGACCCCCAAGATTGGTGGGCTGACGATTACTTGCGTACGTGTCGGCGGAGTCGAAATCCCTAACGGCAAGAGAGTGGAGTACTCGCTTCAGTACAT CCATGGAATCGGCCGCTCGATGTCGCGGCAAATCCTAGCGGACTTGAGCTTGGAAAACAAGATAACCAAGGATTTGAGCGAGGAGGAGCTTGCCAATGTT CGTGCTGAAGTCTCCAAGTACATGATTGAAGGAGACTTGAGGCGTTTCAATGCGATCAATATAAGGAGGTTGAAGGAGATCCAATGCTATAGAGGAATTA GGCATATAAGGGGATTGCCCTGCAGAGGGCAGCGTACCAAGAACAACTGCCGGACTTTGAAAGGTAAGCGAATCGCCATTGCTGGGAAGAAGAAAGCAGT TAAGTAA
AA sequence Show only first row Show all	>Lus10018192 pacid=23145257 polypeptide=Lus10018192 locus=Lus10018192.g ID=Lus10018192.BGIv1.0 annot-version=v1.0 MIQSLAMPAAPSVSLFCNGLNRSSLSNFVSLPRQKTPKIGGLTITCVRVGGVEIPNGKRVEYSLQYIHGIGRSMSRQILADLSLENKITKDLSEEELANV RAEVSKYMIEGDLRRFNAINIRRLKEIQCYRGIRHIRGLPCRGQRTKNNCRTLKGKRIAIAGKKKAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	0	1
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	1.7	0.9629
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	3.5	0.9608
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	4.2	0.9598
AT2G33180			unknown protein		Lus10023686 [exp]	4.2	0.9576
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	4.2	0.9620
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	5.5	0.9575
AT2G21385			unknown protein		Lus10017494 [exp]	5.9	0.9582
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	6.0	0.9562
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10018212 [exp]	6.9	0.9472
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031215 [exp]	8.1	0.9538

Compare expression of checked genes

Lus10018192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.