Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37140 127 / 4e-35 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT3G26120 124 / 1e-31 TEL1 terminal EAR1-like 1 (.1) AT1G67770 113 / 7e-28 TEL2 terminal EAR1-like 2 (.1) AT5G07930 107 / 5e-27 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT5G61960 98 / 2e-22 AML1 MEI2-like protein 1 (.1.2) AT5G07290 95 / 3e-21 AML4 MEI2-like 4 (.1) AT1G29400 93 / 1e-20 AML5 MEI2-like protein 5 (.1.2) AT4G18120 91 / 6e-20 AML3 MEI2-like 3 (.1.2) AT2G42890 72 / 1e-13 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025640 [exp] 342 / 1e-118 AT1G37140 131 / 3e-37 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018194 [exp] 233 / 3e-74 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025641 [exp] 222 / 2e-69 AT1G37140 142 / 6e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10036953 [exp] 125 / 1e-31 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 123 / 4e-31 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 96 / 3e-23 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10020769 [exp] 92 / 4e-20 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 88 / 5e-19 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10002046 [exp] 88 / 5e-19 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088200 [exp] 145 / 2e-40 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.010G051100 [exp] 130 / 2e-33 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 126 / 3e-33 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 126 / 3e-32 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.015G106000 [exp] 96 / 2e-21 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.001G067300 [exp] 95 / 2e-21 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107100 [exp] 94 / 4e-21 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.003G162700 [exp] 90 / 2e-19 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.005G202000 [exp] 89 / 4e-19 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 87 / 1e-18 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Lus10018195 pacid=23145213 polypeptide=Lus10018195 locus=Lus10018195.g ID=Lus10018195.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCCAAAACCTCTCAACCCCTCAACCCAAACGCCACACCCTACACCACCCTCACCGCCGCCGCCGGAAGCCAACCACCACCACCACATCACC CGACGTCATCACCGCCCCGTCTCCCCCACCATTCCTACCAGCGACTGGCACCTCTCTCCGCCAAAGCCGCCCCCTTCCACCGCCACCCCCACCGCCACTT TATCTACTACTACCGCCAAACCTCCTTTCATTCCACCAACATCCGCTCCCGGGACTGTCGTGGTAGTTTTTTCAACCCGGTTCCTCACGCGGCAGTCCCT CACTCACCAGTGGCGGCGGCGGCGGCTTCAAGCAGCTTTCAATCTGGGATGTTTCTCAAGAAGAGGAAGAAGATTTGGAAGAAGAAGAACGACCACAAAA CGTTCGTTGTTGACCGACGTGGCGATGGAAGTCCGAGATTTTCGGCGTTGACTAAGTTGACTGAAGAAACGGAAAAGAGCGGCGGCGCTGATGTAGAGAA GGAGGTGGCGGGGGCAGCTACGAGCTTAATGATTCGCAATATTCCGAATCATTTCCAGAGGAGTCGGATTATGGGATATCTGGATAGTCACTGCGCCGCC GAGAACGCCTCCGCCGTCGCCGGCGGAAGTGTGCTGTCCGAGTATGACTTTGTCTACCTTCCGTTTGACTTCAGTACTGGGGCGAATCTGGGATACGCTT TCGTGAACTTCACCACCGCCGTCGGCGCGTCCAGATTCCGGCGGTCTTTCAACGACTACACATGGGGAATGTGCAATTCCCGCAAAATCTGCCAAATCTC CGACGCTGCTATTCAGGGGAAGACGGCGTTGGTTGCTAAGTTCAGGAACTCAACGTTCAGATGCCAACGTGAGATATACCTTCCGCTTGTCTTCGATCCT CCACGGGGCGAAAGGTTCCCGAATTCGCTTGGAACGATTGTTGGCCAGTGTGCACCACCTCCTTTCCCTCGTCGCTGA
AA sequence Show only first row Show all	>Lus10018195 pacid=23145213 polypeptide=Lus10018195 locus=Lus10018195.g ID=Lus10018195.BGIv1.0 annot-version=v1.0 MASSKTSQPLNPNATPYTTLTAAAGSQPPPPHHPTSSPPRLPHHSYQRLAPLSAKAAPFHRHPHRHFIYYYRQTSFHSTNIRSRDCRGSFFNPVPHAAVP HSPVAAAAASSSFQSGMFLKKRKKIWKKKNDHKTFVVDRRGDGSPRFSALTKLTEETEKSGGADVEKEVAGAATSLMIRNIPNHFQRSRIMGYLDSHCAA ENASAVAGGSVLSEYDFVYLPFDFSTGANLGYAFVNFTTAVGASRFRRSFNDYTWGMCNSRKICQISDAAIQGKTALVAKFRNSTFRCQREIYLPLVFDP PRGERFPNSLGTIVGQCAPPPFPRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	0	1
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	3.0	0.9848
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	4.0	0.9845
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10018522 [exp]	4.0	0.9604
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	7.7	0.9608
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	9.9	0.9723
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	10.6	0.9720
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	11.1	0.9824
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	11.4	0.9676
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	12.0	0.9693
AT2G23945			Eukaryotic aspartyl protease f...		Lus10015487 [exp]	12.1	0.8989

Compare expression of checked genes

Lus10018195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.