Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39360 362 / 3e-128 EDL2 EID1-like 2 (.1) AT5G15440 352 / 2e-123 EDL1 EID1-like 1 (.1) AT3G63060 153 / 1e-45 EDL3 EID1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025639 [exp] 422 / 1e-151 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10042699 [exp] 401 / 1e-143 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10029662 [exp] 400 / 5e-143 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10028001 [exp] 158 / 3e-47 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10000659 [exp] 108 / 7e-29 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10007870 [exp] 53 / 7e-08 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 49 / 1e-06 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 388 / 2e-138 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 384 / 1e-136 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 61 / 9e-11 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 59 / 6e-10 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018196 pacid=23145219 polypeptide=Lus10018196 locus=Lus10018196.g ID=Lus10018196.BGIv1.0 annot-version=v1.0 ATGATTTTAACAAAGCAATACCGGTGCATACACTCATCAAGCTGTCAATGTACAAAGGGACATCTAAGTGAAGATGTGATATTCTTAGTTTTCCAGCAGC TGAACTGGAATCCCAAGTTGATTGCCGCTCTATCATGCACTTGCAAGTGGTTTGATGATCTTGCCAAGCGAGTACTATGGAAGGAATTCTGCAAAACAAG AGCTCCAAAGATGATGATCGATCTACAGTCCAGCGGAAGCCACAGCGTGGATGGAAGCTGGAGGGCACTCGGGAAGATGCTTATCTACTGTTCCGGATGC ACCAAGGGTGGCCTGTTCAACAGCACTCAAGTACCCGGCCATTTTGTCCACAGGACTCGGTTCTCTAGAACATCAGGCAAAAGCTTTCTCCTGCCTGCAT GTAGAACCGACGATTTATACGTCTCGGACCCGTGCGAGCATCTAGACCAAGGGGACGAAGGGGATATAGGATTCTTTCGAGGAATCTTCAAGTCATTCCC TGTTTCAAAAGTCCGGAAGATGCTGATTCAAAGAGGGGCTCCCTTGCATCCTACACAGTCGTGTCCATATTGCAAGGCAAAGCTTTGGAACATGCTGCAA GCAAAGATGATAACGACAAGTGTCACTTGTCGGAGTCGGAGGAGGTTTCCGAGATTGAGAGATGATTCGATTGTAACCAAGGTATCGTTCTGCACTAAGA ACATTGATTAA
AA sequence Show only first row Show all	>Lus10018196 pacid=23145219 polypeptide=Lus10018196 locus=Lus10018196.g ID=Lus10018196.BGIv1.0 annot-version=v1.0 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIAALSCTCKWFDDLAKRVLWKEFCKTRAPKMMIDLQSSGSHSVDGSWRALGKMLIYCSGC TKGGLFNSTQVPGHFVHRTRFSRTSGKSFLLPACRTDDLYVSDPCEHLDQGDEGDIGFFRGIFKSFPVSKVRKMLIQRGAPLHPTQSCPYCKAKLWNMLQ AKMITTSVTCRSRRRFPRLRDDSIVTKVSFCTKNID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	0	1
					Lus10007301 [exp]	3.2	0.8652
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	6.4	0.8980
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	10.2	0.8756
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	14.1	0.8573
AT1G55160			unknown protein		Lus10019322 [exp]	16.8	0.8790
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	21.0	0.8445
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	23.7	0.8899
AT1G10660			unknown protein		Lus10038056 [exp]	27.3	0.8651
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	30.0	0.8472
AT5G11680			unknown protein		Lus10027000 [exp]	30.9	0.8652

Compare expression of checked genes

Lus10018196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.