Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29290 394 / 2e-132 EMB2076 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 121 / 2e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 111 / 7e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 108 / 1e-24 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G22960 103 / 2e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 101 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 96 / 7e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 96 / 7e-21 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 93 / 5e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G13040 93 / 7e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025637 [exp] 833 / 0 AT3G29290 383 / 9e-129 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 117 / 1e-27 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 115 / 5e-27 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 106 / 5e-24 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 105 / 1e-23 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017134 [exp] 98 / 2e-21 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006962 [exp] 96 / 1e-20 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 95 / 3e-20 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022025 [exp] 92 / 1e-19 AT1G08610 507 / 2e-175 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090500 [exp] 451 / 4e-153 AT3G29290 559 / 0.0 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 108 / 9e-25 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 105 / 4e-24 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 105 / 8e-24 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G297300 [exp] 104 / 1e-23 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 104 / 1e-23 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 104 / 2e-23 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G069600 [exp] 101 / 1e-22 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 101 / 2e-22 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 98 / 1e-21 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018198 pacid=23145268 polypeptide=Lus10018198 locus=Lus10018198.g ID=Lus10018198.BGIv1.0 annot-version=v1.0 ATGATAATTGGAAACTGCGTCGATAAAGTTTGTTTCTGGGGTTCAAATGGGAGGATAAAGTGTGGACTTTTATATCAGATTGGTGGAGCTCAATTGAAAT TCACCCCCAAACCCCAATGTGTGAATGGCCGCTCTCAATCCGCCATGGAAGTTGTTCAATTTTCAAGTAAAGGTATGCATTTGCTAGAGGAAACTGATGA ACAGAAGCTATCAGAAAGGATTCTTATGCTTAGCAGATCCAACAAGGTCAGGAGTGCAATGTCACTGTTCAGATCAATGAGGTACACAGGACTAATTCCT GATCAACACGCTTGTAATTCTCTCTTAGCATCTTTGTTAAGGAAAAAATATCAAATTGATGATGCATTGGAAGTGTTCGAGTTCATGAAGTCGAACGAGA TAACAACTCCTCACACCTACAGCTTGATGCTGAAAGCAGTGGCAGATACTGAAGGTTTCGATTCAGCTTTCGGTATGTATGGAACAATGGAAGAGAAAGA TTTTGATGTGGTTGTTTACAATACTGTCATATCGATCTGTGGGAAAACGAACGATTGGGATCGAGCCAAGAAGGTATGGAGAACGATGAATGAAAGGGAG TGTCTTGGATCAGAGGTTACGTACTCATTGTTAGTTAGCATTTTCGGCAGGTGCGGCAAGAATGAGCTTGCTTTTAGTGCCTACAACGAAATGCGTCGAA ATGGATTGAGAAATTCTAACTTGATTGAGGCTGTGATCGTGTTATACGCGAAAGAAGGGAAGTGGGATTTGGCTTTGGAAAATTTCCAGGAAATTTTGAA TGATGGGATGATGAAATGTCCAAGTCTTGATACATGCCATGCTCTAATGAAGTCATTAGGATTAGCTGGGAAGGTGGAAAGGGCGTTTTGGGTGTTTGAA TGTCTCGAAATGTTGGGCCACAAACCGAATTCGTACACTTTTAATGCGTTGCTCAAGGCTCTATACTGGGGGAACAGACATAGCGACGTTATTCGACTTT TCGAAGTACTTTTAGAGACAAAGGAGAGGTCTTTGATTGATGAGCTGGCGTATAGAACTGCTCTGTTGTCTTGTCGGAGGCTTGGTCTGTCAGAGAAGGC TGTTCAGATACTGTGGAAGATGGAAGGTAGTTGTGAAGTGTTGGTTTCAAGTGTGTGTTATAATCTTGTTATTAGTGCTTGTGAGAAGGGTGGGAATGCT GATGTGGCACTGCGAGTTTATGAACGCATGGTGCAGCAAGACTGCAGTCCGGATCGGTATACTTATCTGTCGTTGGTACGAGTCTGCATTTCGCGGTCGA TGTGGTCTGAAGTGGAAGGAATTCTAGATCAGGTTGCTGCTGATAAAACTCTCTACACAGCTGTCATGAATGCAATGTGTTCAAGTGGCAATCTTGATGC AGCTAGGAAGCTTAACATGAAAATACAAACAACTGACATTGCACCTAATGCCAAGACATAA
AA sequence Show only first row Show all	>Lus10018198 pacid=23145268 polypeptide=Lus10018198 locus=Lus10018198.g ID=Lus10018198.BGIv1.0 annot-version=v1.0 MIIGNCVDKVCFWGSNGRIKCGLLYQIGGAQLKFTPKPQCVNGRSQSAMEVVQFSSKGMHLLEETDEQKLSERILMLSRSNKVRSAMSLFRSMRYTGLIP DQHACNSLLASLLRKKYQIDDALEVFEFMKSNEITTPHTYSLMLKAVADTEGFDSAFGMYGTMEEKDFDVVVYNTVISICGKTNDWDRAKKVWRTMNERE CLGSEVTYSLLVSIFGRCGKNELAFSAYNEMRRNGLRNSNLIEAVIVLYAKEGKWDLALENFQEILNDGMMKCPSLDTCHALMKSLGLAGKVERAFWVFE CLEMLGHKPNSYTFNALLKALYWGNRHSDVIRLFEVLLETKERSLIDELAYRTALLSCRRLGLSEKAVQILWKMEGSCEVLVSSVCYNLVISACEKGGNA DVALRVYERMVQQDCSPDRYTYLSLVRVCISRSMWSEVEGILDQVAADKTLYTAVMNAMCSSGNLDAARKLNMKIQTTDIAPNAKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10018198 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	4.9	0.8562
AT5G64480			unknown protein		Lus10020488 [exp]	6.9	0.8144
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	8.0	0.8642
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	16.4	0.8604
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	19.5	0.8038
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	20.1	0.8102
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	21.8	0.8549
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	25.9	0.8215
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	30.7	0.8499
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	31.0	0.8042

Compare expression of checked genes

Lus10018198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.