Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21980 1102 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 1093 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 779 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G07960 741 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 736 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 730 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G09920 550 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 530 / 4e-178 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 520 / 3e-174 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G01460 244 / 6e-73 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025636 [exp] 1410 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 1181 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10039011 [exp] 717 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 701 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 701 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10008651 [exp] 687 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 677 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 640 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 629 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172800 [exp] 1219 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 1196 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 909 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 905 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 744 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 714 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 701 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G211200 [exp] 521 / 2e-174 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 494 / 4e-164 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 437 / 2e-141 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10018200 pacid=23145248 polypeptide=Lus10018200 locus=Lus10018200.g ID=Lus10018200.BGIv1.0 annot-version=v1.0 ATGCGCGAGGGAGTAATCGTCGACGACCGGAGCAACGAGGTTTCCGGAGGTGGAGGGAAGAAGAAGGAGGAAGGCAACAACAACAACAACAGCAGCAGCA AGCTGGTGGTGATGCCGGCAGCGGGGATCTCATTGCCGCCGCAGCAGCCGATTGTGGTGGTGCGTCCTCGATCTCAGTCAGCAACTCGACGAGTGACCCC GACGGCTGCTTCGGCGGCGGAAGGGGGTGAATCGACGGTGGAGAAGCACCTGCCGAATGGAGATCTGTACATCGGATCGTTCTCGGGGAACGCGCCGCAC GGATCGGGGAAGTATCTATGGGCGGACGGGTGTATGTACGAAGGAGAGTGGCGTAGAGGCAAAGCATCGGGAAAGGGGAAATTCTCGTGGCCGTCGGGGG CGACATTCGAAGGGGAATTCAAGTCGGGTCGGATGGAAGGGTTCGGGACGTTTACAGGATCCGACGGGGACACGTACCGCGGATCCTGGAGCTCCGATCG GAAGCATGGGTACGGACAGAAGCGGTACGCGAACGGAGATTTTTATGAAGGGACGTGGAAGAAGAATCTGCAAGACGGACAAGGGAGGTACGTGTGGAGG AACGGGAACGAGTACGTCGGAGAGTGGAAGAGCGGCGTTATCTTCGGGAAGGGAGTTTTGATTTGGGCGAACGGGAATCGATACGAAGGACAATGGGAGA GCGGAGTTCCTAAAGGGAATGGAGTTTTCACTTGGCCGGACGGGAGTAGCTACATCGGAACTTGGAATAGTGGTGCCGGAAAAGATTTGAAAGCTCAGCA GCAGTTGAACGGGACTTTTTATCCAGGGAATGGGAAGGAGCATTGTTTCAAAGGTAGCGACGGCGGAGCCGGAGCTGGAGATTTCGTCACCACATTGGCG ACGACGAGGAAGAGATCGTCGGTGGACAGTGGAAGAGGGAGCAGTATCAATTTCCCAAGGATATGCATATGGGAGAGCGACGGCGAAGCTGGGGATATCA CTTGTGACATCATTGATAATGTGGAGGCGTCGATGATTTACAGAGATGGATTAGGGTTGGATGGAGATGGGATTCGTCAGTTTAGGAAAGGACCTTGTTG TTTCAATGGAGAGGCGACTAAGAAGACTGGTCAGACCATATCCAAAGGACATAAGAACTACGAGCTTATGCTTAATTTGCAGCTTGGTATCAGGTACTCT GTGGGGAAACATGCTCAGATTGTAAGGGACTTGAAGCCGACTGATTTTGATCCAAAGGAGAAGTTCTGGACGAGGTTTCCTTCCGAGGGCTCGAAAATTA CACCTCCACATCAATCTGTGGAGTTCCGATGGAAGGATTACTGTCCGATGGTGTTCCGACGTTTGAGGGATCTGTTCGAAGTAGATACGGCCGATTACAT GTTGGCTATATGTGGGAACGATGCCCTTAGGGAGCTTTCATCTCCAGGAAAGAGTGGAAGCTTCTTTTACCTCACTCAGGACGATAGATTTATGATCAAG ACGGTGAAGAAATCTGAAGTCAAGGTACTCATTCGGATGCTTTCCAGTTATTACCAACACGTCTGTCGATATGAGAATTCTCTTGTGACGAAGTTCTTTG GCGTGCATTGTGTTAAACCAATTGGTGGTCAGAAGACTCGTTTCATTGTGATGGGGAACTTGTTCTGCTCTGAGTATAGAATACATAGAAGATTCGACTT AAAAGGATCTTCGTATGGTCGGACAACAGATAAACCTGAGGGTGAGATCGATGAAACGACAACTCTCAAGGACCTTGATCTCAATTTCGTGTTTCGGCTT CAGCGAAATTGGTACCAGGAACTTATGAAGCAAATCGATCGCGACTGCGAGTTCCTAGAAGCAGAGAGGATTATGGATTACAGTCTTTTGGTCGGTCTTC ATTTCCGCGATGACAGTACTCGTGACAAAATGGGATTATCACCTTTTGTTCAACGCTCAGGGTCCAAGGATTCCTACCAAAACGAGAAGTTCATGCGCGG CTGTCGCTTCCTCGAAGCAGAGCTACAAGACAGAGATCGAATTCTAGCTGGCAGAAAGCCATTGATAAGGCTGGGAGCGAACATGCCCGCACGAGCAGAG CGAATGGCTCGACGTAGCGACTTCGACCAGTACACCGCTGGAGGAGGGAGCCAGTTTACGTCGACAATGGCGCGAAGAAGCGGCGAGATCAGCGAGGTGG TGCTCTACTTCGGAGTGATTGATATTTTACAAGACTACGACATTAGCAAGAAGCTGGAACACGCGTACAAGTCATGGCAGGTGGACGCATCCTCGATCTC AGCCGTTGATCCCAAGATGTACTCGAGGAGGTTCCGAGACTTCATCGGCCGAATATTCATTGAAGACAGGTAG
AA sequence Show only first row Show all	>Lus10018200 pacid=23145248 polypeptide=Lus10018200 locus=Lus10018200.g ID=Lus10018200.BGIv1.0 annot-version=v1.0 MREGVIVDDRSNEVSGGGGKKKEEGNNNNNSSSKLVVMPAAGISLPPQQPIVVVRPRSQSATRRVTPTAASAAEGGESTVEKHLPNGDLYIGSFSGNAPH GSGKYLWADGCMYEGEWRRGKASGKGKFSWPSGATFEGEFKSGRMEGFGTFTGSDGDTYRGSWSSDRKHGYGQKRYANGDFYEGTWKKNLQDGQGRYVWR NGNEYVGEWKSGVIFGKGVLIWANGNRYEGQWESGVPKGNGVFTWPDGSSYIGTWNSGAGKDLKAQQQLNGTFYPGNGKEHCFKGSDGGAGAGDFVTTLA TTRKRSSVDSGRGSSINFPRICIWESDGEAGDITCDIIDNVEASMIYRDGLGLDGDGIRQFRKGPCCFNGEATKKTGQTISKGHKNYELMLNLQLGIRYS VGKHAQIVRDLKPTDFDPKEKFWTRFPSEGSKITPPHQSVEFRWKDYCPMVFRRLRDLFEVDTADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIK TVKKSEVKVLIRMLSSYYQHVCRYENSLVTKFFGVHCVKPIGGQKTRFIVMGNLFCSEYRIHRRFDLKGSSYGRTTDKPEGEIDETTTLKDLDLNFVFRL QRNWYQELMKQIDRDCEFLEAERIMDYSLLVGLHFRDDSTRDKMGLSPFVQRSGSKDSYQNEKFMRGCRFLEAELQDRDRILAGRKPLIRLGANMPARAE RMARRSDFDQYTAGGGSQFTSTMARRSGEISEVVLYFGVIDILQDYDISKKLEHAYKSWQVDASSISAVDPKMYSRRFRDFIGRIFIEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	0	1
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10025636 [exp]	1.0	0.8403
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10027808 [exp]	3.0	0.7629
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	5.1	0.7271
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	5.5	0.8075
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	8.9	0.7233
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	12.6	0.7531
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	14.7	0.7417
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10024187 [exp]	15.9	0.6999
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10020863 [exp]	19.1	0.7296
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	21.2	0.7397

Compare expression of checked genes

Lus10018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.