Plant FIBer expression Database

Lus10018201 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37300 104 / 5e-28 MEE59 maternal effect embryo arrest 59 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040706
[exp]
345 / 1e-122 AT4G37300 108 / 5e-30 maternal effect embryo arrest 59 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G041100
[exp]
161 / 2e-50 AT4G37300 96 / 2e-25 maternal effect embryo arrest 59 (.1)
Potri.007G049800
[exp]
86 / 1e-20 AT4G37300 128 / 8e-38 maternal effect embryo arrest 59 (.1)
PFAM info
Representative CDS sequence
>Lus10018201 pacid=23179391 polypeptide=Lus10018201 locus=Lus10018201.g ID=Lus10018201.BGIv1.0 annot-version=v1.0
ATGGAAAGCAGGAGGCCGAACCGGAGCGACGACCATCTGTCGGCAGAGCAGGAGGCGGAGATGGAGCAACAAACTAGAGGCTACTTTGACGACATTGCTC
CAAAGCGTCACACTAAGCCTCAGCGCAGTGACCCTTCTGCAGCTAAATACGTCGACTCTCTCCCCGGCGGCGGTGAAGGCGCTATCCCGGAGCTCGTTGA
GTTCCAACGCCTCGAGAGCTCCGACACTCATGAATCATACGATGGGAGAAGCGTAGAAGCGACGATGAGGGAGGAGTTTGTGGAGACGGACTACTATAAG
GATCTCAACTGCGTTGACAAGCAACATCACACGACGGGAACTGGGTTCATCAAGATGGAAAGTGCTGCTGATGGGAAGTCCTTCCACCTAGAGCCTGACG
AGCAAGAGAAGACCAGCAGCCATGAATCAGGCAGGGGAAACCCTGCTACCAATGAATGGATCCCTGCTACTGCTGATAATGTAAACCCAGTAGAAGCGAC
AATTGAGGACAAAAACTCTGGCTCCGGCCCACCGCCGTTGATCTCATCTCAGATTTTGGTCTTTCCCCGGTTGTACGATCTATCAGTGAATTTTCTCGTG
GCTGTACCGTATGGATATGTAACGACTTTCATATTCGTTTGA
AA sequence
>Lus10018201 pacid=23179391 polypeptide=Lus10018201 locus=Lus10018201.g ID=Lus10018201.BGIv1.0 annot-version=v1.0
MESRRPNRSDDHLSAEQEAEMEQQTRGYFDDIAPKRHTKPQRSDPSAAKYVDSLPGGGEGAIPELVEFQRLESSDTHESYDGRSVEATMREEFVETDYYK
DLNCVDKQHHTTGTGFIKMESAADGKSFHLEPDEQEKTSSHESGRGNPATNEWIPATADNVNPVEATIEDKNSGSGPPPLISSQILVFPRLYDLSVNFLV
AVPYGYVTTFIFV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10018201
[exp]
0 1
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10040706
[exp]
1.0 0.8941
AT5G48250 CO COL10 B-box type zinc finger protein... Lus10041096
[exp]
2.4 0.8451
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10015720
[exp]
4.9 0.8403
Lus10033157
[exp]
4.9 0.7988
AT3G22530 unknown protein Lus10000009
[exp]
5.2 0.7970
AT4G15545 unknown protein Lus10034001
[exp]
5.7 0.8250
Lus10010597
[exp]
7.4 0.8052
AT3G46640 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, H... Lus10040780
[exp]
8.1 0.7787
Lus10014061
[exp]
8.4 0.7991
AT3G22530 unknown protein Lus10035239
[exp]
8.7 0.7489

Lus10018201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.