Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 143 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 139 / 9e-37 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G73530 59 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 56 / 9e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 59 / 3e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G54580 56 / 5e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 55 / 7e-09 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 54 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 56 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 56 / 2e-08 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028400 [exp] 145 / 2e-40 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 144 / 1e-39 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 140 / 2e-38 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10017507 [exp] 119 / 9e-31 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040854 [exp] 59 / 1e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018277 [exp] 64 / 2e-10 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 63 / 3e-10 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10015146 [exp] 58 / 6e-10 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 60 / 9e-10 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041700 [exp] 179 / 1e-51 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 171 / 8e-49 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G130301 [exp] 155 / 2e-44 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 144 / 9e-40 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 96 / 3e-23 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.011G130300 [exp] 62 / 4e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 61 / 9e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 60 / 1e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 62 / 2e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G208500 [exp] 58 / 5e-10 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018202 pacid=23179397 polypeptide=Lus10018202 locus=Lus10018202.g ID=Lus10018202.BGIv1.0 annot-version=v1.0 ATGTCGTATTCGAAGAGATCAAGGTACTCAGTATCGCCTTCACCATACAGGCGACATGGCAGATCAATGTCAAGGTCTTTGTCAAGGTCAAGAAGCCGAT CAAGGAGCCCCTCTGTCGAGAACCCTGGCAACAATCTGTATGTGACAGGGCTGTCGCCTCGTATCACAAAGAGAGACCTCGAGGATCACTTCTCCACCGA GGGAAAGGTGACTGGTGTTAGTCTTGTTGTTGATCCATGGACTAGGGAATCTCGTGGATTTGCGTTTGTAACAATGTCCACTATCGATGAAGCTGAGCGT TGCCTCAAGTATTTGGATCGCTCTGTCCTTGAAGGTCGTGTCATAACTGTTGAAAAGGCAAAGAGGCGGAGGGGCAGGACTCCTACTCCTGGAAAGTATC TGGGGCTCCGCACAGGCGACGGAGAAGCATTAGCGAGTCTTCGAGACGATCCCCGGGTTACTCTCCTTATCCAAGGAGCAGAAGTAGATCCCGGTCTTAT TCATCAGGCCGTGGTAGGAGCAGGTCTTTCTCTCCTCGCAGGAGAAGGTCCTCTTCAGGTTATCGTTACGGGTGCAGGTCCCACTCTCGATCTTTGTACT ATTCCAGGCGCCGAAGGTCCTACTCACGATCTCCGGATTACTACTATGTCCGGAGAAGATCATACTCCAGATCTACATCCCCTTACAGCCGGTCTCCTGT TCGGAGACGCGAGAGATCGTTCTCCCCTTCCGAGTCAGCATACAGCTCACCGACTGACAGTTATGGAAGAACACGGTACTCTTATCGTTCTGTTTCGCAA AGTCCTGCTCGGTCTCCTCCTCCGAGGAGAAGAAGTTCAAGGAGGAGCTATTCAAGAAGTGTGTCCCCTATTAGCCCGAGAAGGCGGTCAAGGAGAAGAA GCTACTCATCCAGTGTTTCTCCTATCCCGAGGAGAAGGCGGTCGAGTAGACGATATTCTCGTAGCGTCTCTCGTAGCCCGAGGAGGAGCTACTCGAGAAG TGTTTCGCCGCCAACGAAGAGGAGCTCGAGGAAGAGGGTGTCATCTTCTAGACACGGCAGTTCTCGACACAGCTATTCGAGGAGTCCTAGCCTGGATGCT AGCTCTAGATCGGTGTCTAGTCATCTTTTGTTCTGGATTGTATCATGGTTTCTATCTGGATCAACCCAAAACAATTGTCGTTCAAAAGTGTCTGGAGAAG AACATACTCACGATTGCCGGATTACCACCATTTCCGGAGAAGATCATACTTCAGACATCCATCCCCACACAGATGGGAGAGATCGCACTCAAAGCCTTTC GAGCCAGCATACAGCTCACCGTCCTCTTATCAATCTTTTCCTCAAAGTCCTTTGTCCCCGAGGAGAAGGATAAATTTGAGGAGTCCTTTGTCCCCGAGGA GAAGGATAAATTTGAGGAGTCCTTTGTCCCCGAGGAGAAGGATAAATTTGAGGAGGAGCGATTCGAGAAGCATTTCCCCTATTAG
AA sequence Show only first row Show all	>Lus10018202 pacid=23179397 polypeptide=Lus10018202 locus=Lus10018202.g ID=Lus10018202.BGIv1.0 annot-version=v1.0 MSYSKRSRYSVSPSPYRRHGRSMSRSLSRSRSRSRSPSVENPGNNLYVTGLSPRITKRDLEDHFSTEGKVTGVSLVVDPWTRESRGFAFVTMSTIDEAER CLKYLDRSVLEGRVITVEKAKRRRGRTPTPGKYLGLRTGDGEALASLRDDPRVTLLIQGAEVDPGLIHQAVVGAGLSLLAGEGPLQVIVTGAGPTLDLCT IPGAEGPTHDLRITTMSGEDHTPDLHPLTAGLLFGDARDRSPLPSQHTAHRLTVMEEHGTLIVLFRKVLLGLLLRGEEVQGGAIQEVCPLLAREGGQGEE ATHPVFLLSRGEGGRVDDILVASLVARGGATREVFRRQRRGARGRGCHLLDTAVLDTAIRGVLAWMLALDRCLVIFCSGLYHGFYLDQPKTIVVQKCLEK NILTIAGLPPFPEKIILQTSIPTQMGEIALKAFRASIQLTVLLSIFSSKSFVPEEKDKFEESFVPEEKDKFEESFVPEEKDKFEEERFEKHFPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	0	1
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	1.0	0.9006
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	5.5	0.8225
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	6.5	0.7914
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	8.5	0.8013
					Lus10014600 [exp]	11.2	0.7842
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	12.6	0.8114
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	13.4	0.7947
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	18.7	0.7686
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	18.9	0.7439
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	21.4	0.7686

Compare expression of checked genes

Lus10018202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.