Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46980 669 / 0 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT2G38060 468 / 5e-155 PHT4;2 phosphate transporter 4;2 (.1) AT5G58940 404 / 7e-131 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT4G00330 380 / 1e-122 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT2G11520 323 / 1e-99 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT4G00370 314 / 4e-96 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 299 / 8e-91 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT1G79620 236 / 1e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 231 / 5e-63 Leucine-rich repeat protein kinase family protein (.1) AT5G20380 218 / 4e-61 PHT4;5 phosphate transporter 4;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040703 [exp] 937 / 0 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10040704 [exp] 754 / 0 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10035532 [exp] 454 / 1e-149 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10027761 [exp] 431 / 2e-142 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10018828 [exp] 394 / 1e-127 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 395 / 1e-126 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 390 / 3e-126 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 380 / 6e-115 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10041796 [exp] 323 / 2e-101 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248200 [exp] 711 / 0 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G041900 [exp] 501 / 1e-168 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.016G111000 [exp] 467 / 2e-154 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.014G087200 [exp] 414 / 2e-135 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 407 / 1e-132 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.006G064200 [exp] 330 / 3e-102 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 317 / 1e-97 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.001G249800 [exp] 316 / 4e-97 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.009G043800 [exp] 314 / 2e-96 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 302 / 4e-91 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018203 pacid=23179325 polypeptide=Lus10018203 locus=Lus10018203.g ID=Lus10018203.BGIv1.0 annot-version=v1.0 ATGAGCTCTTCCTTCCTCTCGTTCCGTCCACCACTTCCATCATCTTCTCCTACCGCATCATCACAACACCGTAGAATCCTCAATTCCCAGCGTCTAATTT CCTCCCCACTTGAGAATTTGCCGTCATGTTCTTCGCCAAGGAGTTCGATTCTACAATACAAGCTGCGCGGATTGCCCTCCTTGCAGCTCCGTTCAGTCTC ATCTTCTTCTTCTTCTTCCTCGCGACTCAAAGCTTCGAAAGATGATGCTGAATTCGACTACTTACCGGACGGCAGTATCGAGCCGCTAAAGCCAAGTTTC AGAGAGTTCATTACCTCGGAGAGAGTGAAAGTGGTGGCGATGCTTGCCCTGGCACTGGCGCTTTGTAATGCCGATCGAGTTGTGATGTCCGTGGCGATTG TGCCGCTCTCGCTTTCTAACGGATGGAGCCGATCTTTCTCTGGTATCGTTCAGTCGTCTTTCTTGTGGGGATACTTAATTTCGCCGATACCTGGAGGAAC CTTAGTGGATTACTACGGCGGCAAGGTGGTTATGGGATGGGGTGTAGCTTTATGGTCATTAGCTACATTTCTCACACCATGGGCGGCAGAAACCTCTTTA TTTGCTCTCCTAGCAATGCGTGCTATGCTTGGCATTGCAGAAGGTGTAGCGCTTCCTTGCATGAATAATATGGTAGTAAGATGGTTCCCGCAAACAGAAC GATCCAGGGCTGTTGGAATCGCCATGGCTGGATTTCAGCTTGGTTGTGCCATTGGGCTCACACTTTCCCCAATTCTCATGTCCAGAGGGGGTACATTCGG GCCATTTGTTATATTCGGACTATCTGGATTTCTTTGGGTGTTAGTTTGGTATGCTGCAATATCAAGTTCTCCTGAGAGAAGTTCACAGATTTCAAATTTT GAGTTGGGCTACATACAACGAGGAAGCAAAAAGCAGAAGTCCACTCCTGCTAAGGAGCGAACCAAGACGAGCAGGATGCTGCCTCCTTTTGGAAGGTTGC TGTCTAAAATGCCAACGTGGTCATTGATTGTAGCCAATGCCATGCATAGCTGGGGGTTTTTTGTCATTCTTTCTTGGATGCCCATCTATTTTAATTATAT ATATCACGTTGATCTCAAACATGCAGCTTGGTTTAGTGCTGTACCCTGGTCTGTGATGGCTTTCATGGGCTACTTTGGGGGCTTGTGGTCGGACGTGTTG ATTCGGGCTGGTGTTACTGTTACTTTGACTCGGAAGATTATGCAGTCAATTGGCTTCCTGGGACCAGCGGTTGCTCTTGTTGGGTTAACGACTGCAAAAA GTCCATCCATTGCTTCTGCTTGGCTAACTTTAGCTGTTGCGCTGAAATCTTTCAGCCACTCTGGCTTTCTTGTGAATCTTCAGGAAATTGCACCACACTA CTCAGGCGTCTTACATGGCATGTCGAACACTGCAGGCACATTAGCAGCCATTTTAGGAACAGTTGGAGCTGGCTATTTTGTGGATCTGACTGGTTCTTTC AGAGGATTCCTGCTACTGACATCGGCTTTATACTTCCTCTCTGCCATTTTCTATATCATCTTCTCAACTGGGGAGAGAGTGGATTTTGATGAAACGGCTC AAAAAGTAAGCTCTTCCATGTTCATCTCAACTATGAAGAAAGGCAGCTCCCGGAAGAAACGAAACAATCATCCTCTTGACAAATTCAACGCCAAAGATTC TCCTTCTCCGTTGATCAAATTCATGAAAGCTGCTGCCGGAAAAGTAGCTTCAGCCTTCACAATTTTCCGGCGGAGTAATCCTCCCGCCGCCGACGTCAAT CTCGCCAGCAAGAGCATTAGCTCTGCTGCTGGATCGTACTTTTCAAGCGAGCTGTCAAGGGTAAGCAACAGCAGCAAGAGCACGTCGTCGAGGTTGAAGT CTTCGAGCTCATACGGATCGTCGTCCACAAGCGGCGGAGGAGTAGTGTTCGGATCGACACAGCAGGGATACTCGCTTCAAGAGATTGTTAAGGCGACCGA TAATTTCTCGTCGGGTACCAAGATTGGAGAAGGTAGTTTTGGGACTGTGTACAAGGGAAAGTTGAAAGATGGGTCTTTTATTGCAGTGAAGCGTGCCAGA AAGAATTCACATGACAAGCGTTTGGCATTGGAGTTCAGGAACGAGATACTTACTCTGTCTAAGATTGAGCATTTGAATCTGGTGAGATTGTACGGCTATG TCGAGCATCAAGACGAGAGGCTTATCGTGGTCGAATATGTCAACAATGGGAACCTCAGAGACCATCTTGACAATAGAAGAGGAACTATACTCGAATTCGC GGAGCGTTTAGACATTGCCATTGATGTTGCACACGCTATTACCTATCTTCACATGTACACAGACCGAGCGATAATCCACAGAGACATAAAAGCATCAAAC ATCCTTCTAAACGACAAGCTTCGAGCCAAAGTTGCAGACTTTGGTTTCGCAAGATTAGCCGCTGAAGATTGCAATGACACCCACATCTCGACTCAGATCA AAGGCACAACTGGTTACTTAGACCCTGAATACCTCAGGACATATACACTCACCGAGAAGAGCGATGTCTTCTCCTTCGGTGTCCTACTCGTTGAACTCGT TACTGGAAGGCACCCGATCGACCAGAATCGATCTATCAACGAGAAAGTTACCATCAAATGGGCAATGAAGAGACTCAAAGACGGAGATGCGATAATGGCG ATGGATCCGATCCTGAGAAGGAGCCCTGCATCGAACAGAGCGACCGAGGATGTTCTGAGACTGGCTCAGAAGTGTCTGGCACCGATGAGACAATTGCGAC CTTCCATGAAGGAATGCGCAGAGGTTCTGTGGAGAATACGAAAGGAGTTTCGAGAAAAGGGCGCCCTTCAGTCTTCCTCTGCGGCTTCAGCTTCTGCTGA TTTTCCCAGGAGGAATCCTAATCAGACCCGGATTACTACATTCGGGTTGGAAGATATTGGTGAGAACCCCAGGTTCGTTTCCGCATGA
AA sequence Show only first row Show all	>Lus10018203 pacid=23179325 polypeptide=Lus10018203 locus=Lus10018203.g ID=Lus10018203.BGIv1.0 annot-version=v1.0 MSSSFLSFRPPLPSSSPTASSQHRRILNSQRLISSPLENLPSCSSPRSSILQYKLRGLPSLQLRSVSSSSSSSSRLKASKDDAEFDYLPDGSIEPLKPSF REFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFSGIVQSSFLWGYLISPIPGGTLVDYYGGKVVMGWGVALWSLATFLTPWAAETSL FALLAMRAMLGIAEGVALPCMNNMVVRWFPQTERSRAVGIAMAGFQLGCAIGLTLSPILMSRGGTFGPFVIFGLSGFLWVLVWYAAISSSPERSSQISNF ELGYIQRGSKKQKSTPAKERTKTSRMLPPFGRLLSKMPTWSLIVANAMHSWGFFVILSWMPIYFNYIYHVDLKHAAWFSAVPWSVMAFMGYFGGLWSDVL IRAGVTVTLTRKIMQSIGFLGPAVALVGLTTAKSPSIASAWLTLAVALKSFSHSGFLVNLQEIAPHYSGVLHGMSNTAGTLAAILGTVGAGYFVDLTGSF RGFLLLTSALYFLSAIFYIIFSTGERVDFDETAQKVSSSMFISTMKKGSSRKKRNNHPLDKFNAKDSPSPLIKFMKAAAGKVASAFTIFRRSNPPAADVN LASKSISSAAGSYFSSELSRVSNSSKSTSSRLKSSSSYGSSSTSGGGVVFGSTQQGYSLQEIVKATDNFSSGTKIGEGSFGTVYKGKLKDGSFIAVKRAR KNSHDKRLALEFRNEILTLSKIEHLNLVRLYGYVEHQDERLIVVEYVNNGNLRDHLDNRRGTILEFAERLDIAIDVAHAITYLHMYTDRAIIHRDIKASN ILLNDKLRAKVADFGFARLAAEDCNDTHISTQIKGTTGYLDPEYLRTYTLTEKSDVFSFGVLLVELVTGRHPIDQNRSINEKVTIKWAMKRLKDGDAIMA MDPILRRSPASNRATEDVLRLAQKCLAPMRQLRPSMKECAEVLWRIRKEFREKGALQSSSAASASADFPRRNPNQTRITTFGLEDIGENPRFVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	0	1
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	3.5	0.8308
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	7.7	0.8086
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	7.9	0.8242
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	8.8	0.8041
AT5G46560			unknown protein		Lus10011046 [exp]	8.8	0.8182
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	9.4	0.7729
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	12.8	0.8058
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	22.2	0.7709
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	26.7	0.7550
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	27.9	0.7868

Compare expression of checked genes

Lus10018203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.