Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 69 / 4e-15 PAR1 protein (.1) AT3G54040 63 / 4e-13 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040714 [exp] 177 / 1e-57 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040702 [exp] 167 / 7e-54 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10040715 [exp] 148 / 6e-46 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10016450 [exp] 147 / 5e-44 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10012788 [exp] 67 / 5e-14 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10017196 [exp] 65 / 1e-13 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10021114 [exp] 64 / 3e-13 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10033988 [exp] 64 / 8e-13 AT5G52390 194 / 3e-62 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039950 [exp] 78 / 7e-19 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G040000 [exp] 78 / 2e-18 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.006G094300 [exp] 73 / 4e-17 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.016G106800 [exp] 73 / 5e-17 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.015G144800 [exp] 70 / 1e-15 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 67 / 1e-14 AT5G52390 213 / 6e-71 PAR1 protein (.1) Potri.009G039900 [exp] 57 / 4e-11 AT3G54040 118 / 4e-34 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10018204 pacid=23179353 polypeptide=Lus10018204 locus=Lus10018204.g ID=Lus10018204.BGIv1.0 annot-version=v1.0 ATGAAGGACATGATCCAGTCGGATGAATGCATCAAGGCATGCGGCGTCGTCAGAAACACCGTAGGGATCTCTTCAGATTACCTCCTCAATCATAAGTTCG TGTCCCGGCTCTGCTCCAGATCCTGCTCCCAATCCTGCCCCAACATCGTCGACCTCTACTCCAACTTGGCTCTAGCTGAAGGGATGGATTTGTACGGTAT GTGCAGCTTGGGTGGTCGTCTTAGGTCGTTGTTGCAGCCTAAGAGTTCGAGTGATGCTCTGGCTAAGGGTGCAATTGGAGGGCCGATTAGTTCACCAATG TCTTCTGCAGTTGGTCTTGATGATGCTGATGCCACTGCTTTTTGTCCCTCTTCTGATGCCAGTACTGCTTTTTGTCCCTCTTCTGATGCATACTGA
AA sequence Show only first row Show all	>Lus10018204 pacid=23179353 polypeptide=Lus10018204 locus=Lus10018204.g ID=Lus10018204.BGIv1.0 annot-version=v1.0 MKDMIQSDECIKACGVVRNTVGISSDYLLNHKFVSRLCSRSCSQSCPNIVDLYSNLALAEGMDLYGMCSLGGRLRSLLQPKSSSDALAKGAIGGPISSPM SSAVGLDDADATAFCPSSDASTAFCPSSDAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	0	1
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	1.0	0.9869
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	7.5	0.9009
					Lus10017959 [exp]	8.8	0.9526
					Lus10009411 [exp]	9.6	0.9398
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	9.7	0.9633
					Lus10001476 [exp]	10.3	0.9238
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10033634 [exp]	11.0	0.8881
					Lus10025268 [exp]	12.1	0.9618
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	14.0	0.8691
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	14.0	0.9618

Compare expression of checked genes

Lus10018204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.