Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29590 206 / 4e-69 Thioesterase superfamily protein (.1) AT1G04290 87 / 2e-22 Thioesterase superfamily protein (.1) AT3G16175 74 / 5e-17 Thioesterase superfamily protein (.1) AT1G52191 55 / 5e-10 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040701 [exp] 306 / 2e-108 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10019228 [exp] 97 / 6e-26 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10004288 [exp] 96 / 2e-25 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10006837 [exp] 86 / 8e-22 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10006834 [exp] 76 / 7e-18 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10037583 [exp] 75 / 2e-17 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10037582 [exp] 48 / 6e-07 AT3G16175 86 / 5e-21 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042100 [exp] 214 / 2e-72 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 89 / 8e-23 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.003G051900 [exp] 86 / 6e-22 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 85 / 2e-21 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) Potri.002G155500 [exp] 40 / 0.0002 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018205 pacid=23179267 polypeptide=Lus10018205 locus=Lus10018205.g ID=Lus10018205.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCGAAGCAGTTCCTCGAGCCGATCCAAGAAGAAGCGGACATGTTATCGCAACTCGTGATCCCCACTCACCGATTCGGCCACGAGTGCAGCT TCTACGAGGACTTCTCCTTACGTGGCATCCGAGTCGACCGAGTCGAGCCAGGCTTCGTTTCCTGCACCTTCACCGTCCCTCGTCGACTCACCGATAGGAG CGGGAAGCTAGCGACAGGAGCGATTGCGAATCTGGTGGACGAAGTTGGAGGCGCGGTGGTTCATGTGGAAGGTCTCCCGATGAATGTCTCCGTGGATATG TCCATCTCATTTCTCTCCTCTGCAAAGCTCCATGATGAATTGGAGATTACATCGAAAGTATTGGGGCGGAAAGGCGGGTACGCTGGAACGGTTGTGCTGG TGAAGAACAAGTTGACTGGGGAGCTGATCGCTGAAGGACGGCATTCCCTGTTTGGTAGACATGCTAGCAAGATGTGA
AA sequence Show only first row Show all	>Lus10018205 pacid=23179267 polypeptide=Lus10018205 locus=Lus10018205.g ID=Lus10018205.BGIv1.0 annot-version=v1.0 MEKAKQFLEPIQEEADMLSQLVIPTHRFGHECSFYEDFSLRGIRVDRVEPGFVSCTFTVPRRLTDRSGKLATGAIANLVDEVGGAVVHVEGLPMNVSVDM SISFLSSAKLHDELEITSKVLGRKGGYAGTVVLVKNKLTGELIAEGRHSLFGRHASKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	1.4	0.9062
AT1G16810			unknown protein		Lus10033383 [exp]	2.4	0.8613
AT4G33740			unknown protein		Lus10012453 [exp]	2.4	0.8587
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002681 [exp]	6.2	0.8219
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	7.5	0.8486
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	12.6	0.8486
AT5G11500			unknown protein		Lus10038625 [exp]	13.1	0.8306
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	14.8	0.8262
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	15.2	0.7978
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	16.2	0.8249

Compare expression of checked genes

Lus10018205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.