Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58930 165 / 2e-44 Protein of unknown function (DUF740) (.1) AT3G46990 142 / 6e-36 Protein of unknown function (DUF740) (.1) AT2G38070 129 / 2e-31 Protein of unknown function (DUF740) (.1) AT3G09070 103 / 6e-23 Protein of unknown function (DUF740) (.1) AT5G01170 97 / 6e-21 Protein of unknown function (DUF740) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040700 [exp] 650 / 0 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1) Lus10035513 [exp] 108 / 3e-24 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1) Lus10027785 [exp] 102 / 2e-22 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248400 [exp] 384 / 2e-126 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1) Potri.009G042200 [exp] 323 / 4e-103 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1) Potri.016G111400 [exp] 158 / 4e-41 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1) Potri.006G096600 [exp] 155 / 5e-40 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [flax] [poplar] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Lus10018206 pacid=23179341 polypeptide=Lus10018206 locus=Lus10018206.g ID=Lus10018206.BGIv1.0 annot-version=v1.0 ATGACTCCTCCTCCTCCTCCGCCACAACCCTCCCACCCCCACTCCCAGCGCCGCCGTTTCCCCTCCTGCCACCGCCACCCTACAAAACCCCTCACCGGAT TCTGCGCCTCCTGCCTCCGCGAACGCCTCGCCGGAATCGACCCGGACACCCACCAGGAAACCCCCATCACCCGTTTAGCCCTAGAGCTCCGCCGATCCAA GTCCTTCTCCAGCAGCTCCAACCCCAACAACAACAATGCCTCCTCCTCCTCCGCCACCACCTCCACTTCCGCCACCACCAACACCACCATCTCCGAGCCT CGCCGCCGCTCCTGCGATGTCATACCCCGCAACAGCCTCTCCGAGCTCTTCCACCACGACCAGGACGGCGAATCCTACGCCAAGGCCATAGCCAAGGCTA AAGCGGTCGTCTCCGAGCTGGAAATGAGAGGGGATGAAATTAGGGTTTTCGACGAGATCGTGCCTCCCGATGTCGTGGACGATTTCGTGGAGGAGGATGG GGAGTTGAAGCCGATGAAGGAGTTTATAGATCTCGAATGTCATAACAAGAAGAAGAGCAATAATCCGAGTAAGGATTTCAAAGAGATCGCTGGGAGCTTC TGGGAAGCCGCTTCGGTTTTCAGCAAGAAATTGGGGAAATGGAATCTGAAGCAGAAGAAAAAGAAAGAGGCGAAGCAACAGCAGCAGCTAAATGACGACG GATTCTCTATAACGATGGATAATAATAATAACGACAAGGGGATACTGAAGAAATTGAAGGACACGCTTACGGAAGGTGGCGAGTATGGACGGAGGAGATC TTGCGATGCGGATCCACGGCACTCAATCGACGGAGGCAGATTGTCGATAGAGGATTCCCGCCGTTCGTTCGACGAGCCAAGAGCTTCGTGGGACGGTTAC TTGATTGGGAGAGCTTATCCAGGGTTTACTCCTTTGGTGTCTGTTGTGGAAGACGATGTGAAGCTGAATAATGATAGGGCAAATAATAAGGATCAGCAGA TTGGGGATCTGAATAATAGGGAAGATGGACGAATCAGTCCAGGAGGAACTGCTCAGACGGTGAGCTATTACTCCGATCCGCGTAGGAGGAAGAGCTTCGA GAGATCCGGATCGGTGAAGGTGATGGAATTAGGGCTCGGAGAAGATGAGTTGAAAGCCATATCAAACGCCAAGGTATCTCCCGAACTTTTCCACGAGGCG AAACTGCTTGTTACCGAGAAAGAATTGAGGGATTCAAATTGGTACTCCGTTAGAGATTACAATGTGGTAGGCAATGTTAATTCCCTAGACAAAGATGTTG ATTCCACTGGTGGGGGGAACAACAATGGTGGTAGTGGGGATAGGAAAGGGTCCAAGTCGAAGAAGCTGCCGAAATGGCGAAATGTCTTGAGTATGTTTGG TAAGAAGAGCAGCGAGAGCAAGTTTGGGGATGGAGAGAGCAGCAGCAGCGGTAGCGTACTTAATCGATCGTTGGCTAGCGAAGATGGCGAGAAGTTTACG AGGAGCTGTACCATTAGTGCGAGGAAGTCATGCGATGTGGTCATGGGCAGGAATAATGGCGGTTTCGAGAATAATAAAGATGGCAGCACGCCGCAGAGGA GAGACCAGCTGATGCTGACGAGGAATAAGAGCGCTAGGTATTCGCCGAGCCCGAACAATGTGGATAATGGTCTGATGAGATTCTACTTGACACCACTGAG GACTGACAGTAGAAGCAAATCAGGGAAGAGTAGGCTAAAGAACCCTTTGTCCTTGACAAGGAATGTATTGTAA
AA sequence Show only first row Show all	>Lus10018206 pacid=23179341 polypeptide=Lus10018206 locus=Lus10018206.g ID=Lus10018206.BGIv1.0 annot-version=v1.0 MTPPPPPPQPSHPHSQRRRFPSCHRHPTKPLTGFCASCLRERLAGIDPDTHQETPITRLALELRRSKSFSSSSNPNNNNASSSSATTSTSATTNTTISEP RRRSCDVIPRNSLSELFHHDQDGESYAKAIAKAKAVVSELEMRGDEIRVFDEIVPPDVVDDFVEEDGELKPMKEFIDLECHNKKKSNNPSKDFKEIAGSF WEAASVFSKKLGKWNLKQKKKKEAKQQQQLNDDGFSITMDNNNNDKGILKKLKDTLTEGGEYGRRRSCDADPRHSIDGGRLSIEDSRRSFDEPRASWDGY LIGRAYPGFTPLVSVVEDDVKLNNDRANNKDQQIGDLNNREDGRISPGGTAQTVSYYSDPRRRKSFERSGSVKVMELGLGEDELKAISNAKVSPELFHEA KLLVTEKELRDSNWYSVRDYNVVGNVNSLDKDVDSTGGGNNNGGSGDRKGSKSKKLPKWRNVLSMFGKKSSESKFGDGESSSSGSVLNRSLASEDGEKFT RSCTISARKSCDVVMGRNNGGFENNKDGSTPQRRDQLMLTRNKSARYSPSPNNVDNGLMRFYLTPLRTDSRSKSGKSRLKNPLSLTRNVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	1.4	0.9485
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	2.4	0.9434
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	5.1	0.9458
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	5.3	0.9265
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	5.7	0.9254
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	7.1	0.9356
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	7.5	0.9088
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	8.2	0.9366
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	8.5	0.9099
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	9.5	0.9180

Compare expression of checked genes

Lus10018206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.