Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01180 802 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 796 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 699 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 653 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 588 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G46050 459 / 9e-154 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 452 / 4e-151 Major facilitator superfamily protein (.1) AT2G40460 447 / 7e-149 Major facilitator superfamily protein (.1) AT1G68570 446 / 2e-148 Major facilitator superfamily protein (.1) AT4G21680 444 / 8e-148 NRT1.8 NITRATE TRANSPORTER 1.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040698 [exp] 973 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 795 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10035516 [exp] 790 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 702 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 697 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 681 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 679 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 642 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 514 / 6e-175 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042400 [exp] 915 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 904 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 834 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 795 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 790 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 705 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 640 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 516 / 1e-175 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 500 / 2e-169 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.005G233500 [exp] 499 / 1e-168 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10018207 pacid=23179262 polypeptide=Lus10018207 locus=Lus10018207.g ID=Lus10018207.BGIv1.0 annot-version=v1.0 ATGTCAGAGGAGGACTTCCTCACGAAAGATGGGACTCTGGATCATAAAGGGAATCCTGCTGATAAGAGGATTACTGGAACCTGGAAAGCATGTCCCTTTA TCATAGGAAATGAATGCTGCGAGAGGTTGGCTTACTATGGAATGAGCTCCAATCTTGTGCTCTACTTCAAGAATCAGCTGAACCAAAGCAGTGCCACTGC TACCAAGAACAACTCTGACTGGAGTGGAACTTGCTACCTCACACCTCTATTGGGAGCCTTTCTTGCTGATGCTTATCTTGGTAGATACTGGACGATTGCT GGCTTCTCCATCATCTATGTCTTTGGAATGACACTTCTAGCAATGTCAGCATCAGTCCCGGGCCTGAAACCAACATGCATATCAAAAGACAACTGCCACG CCACAGAAGGCCAGAGCGCGGTTTTTTTCGTAGCTCTCTACATGATAGCTCTAGGGACTGGAGGGATCAAGCCTTGTGTCTCATCCTACGGGGCGGACCA GTTTGATGATGCTGACGTGGAAGAGAAGGAGCACAAGGCTTCTTTCTTCAACTGGTTCTACTTCTCCATCAACGTTGGTGCATTGGTTGCTAGCTCCTTA CTGGTTTGGGTCCAGGAGAATGTGAGCTGGGGATTGGGGTTCGGGATCCCAGCCATAGCGATGGCTATTGCTGTTGCGAGCTTCTTTTCGGGAACTCACA AGTATAGGTATCAGAAGCCTGGTGGTAGCCCTCTTACTAGAATCTGTCAGGTCATTGTGGCTTCTTGCAGAAAGTACAAAGTTAGTCCTCCTAACGACAA GTCGCTTCTTTATGAGAATGCTGATTCTGAATCCGGCATCACGGGAAGCCGGAAACTTGATCACACCAAAGATTTCAGTTTCCTGGACAAGGCAGCAGTG GAGACAGAGAAAGACCACATAAAGGACACATCAGTAAACCCATGGAGGCTATGCACAGTAACCCAAATCGAGGAATTCAAAGCCATAATCCGCCTGCTCC CGATCTGGGCAACCGGTATAGTCTTCGCAGCAGTATACAGCCAAATGAGCAACCTTTTCGTCCTACAGGGAGACACAATGGACAAACGAATAGGAAACTC CAAGTTCAAAATCTCCGCAGCAAACGTATCAGTATTCGACACAATCAGCGTCATATTCTGGGTGCCAATCTACGACAGGCTTATAGTCCCAGCCGTCAGA AAAATCACAGGCCACAAGAACGGGTTCACCCAGCTCCAACGAATGGGGATCGGGCTAGTAATCTCCATTTTCGCAATGGTGTACCCCGCCATCCTGGAGC TGATCAGGCTTAAAATGGTGAAGGAGCACAACTATTACGAGTTTGAATCGGTCCCGATTTCGATATTCTGGCAGGTTCCGCAGTATTTCCTGATCGGTTG CGCTGAGGTGTTCACTTTCATCGGGCAGCTCGAGTTCTTCTACGAGCAGGCCCCCGATGCGATGAGGAGCTTGTGTTCGGCTCTTTCGTTGACTACTGTG GCGTTGGGGAATTACTTGAGCTCGCTGCTGGTGACGATAGTGACGGATGTTACGACTAAGGGAGGGAAGCCCGGGTGGATTCCGGACAACTTGAACTATG GCCATGTGGATTACTTCTTCTGGCTTCTGGCTGTGCTGAGTGTTGTGAATTTGTTGGCGTATATGGTGATTGCGTGTGCCACCGCTGGAACAATCCTGCA GCTCGCTCTTCTACGATTAACCCCTTCTCTAATGGCGCGCAAGCGTTACCAAGAAGCCAAAACAGGGATCGAGTATCTAAAATCGTTGGATTACGACAAG TACCTGAGCAAAGTAGGCATAGGAAGAAATGACTGGTACTTCTGGAAGCAAATCGGGAAAGCACTAGCCTGCACCTACACGATCTTCGGCCTGGGATGGC TATACAACGAGACATCCCCACTCGGATGGTGGACTTTGAAGCCGAGACCCAAAGAGGAGAAAGAGCTGGCTCATCTATACGAGCGGAGGGAGTTCCCTTA CCCGGGAGATGCGGAGGCCATGGAAGAGTTCATCACCAAGGGCGGAATGATAGGCACTGCCATCGGCTCAAAGGCTGGGGCGGAGACTGATAAGGACGCG GTCAATTTCCAGACGGAGCTCCAGAACAAGAAGTTCGAACAGGAGGCGCATAAGCTTTGGATCAGGATGCGGAATGAAGTCATCCAGGAGCTTCAAGAGA AAGGGTTCGAGATCGAGTGA
AA sequence Show only first row Show all	>Lus10018207 pacid=23179262 polypeptide=Lus10018207 locus=Lus10018207.g ID=Lus10018207.BGIv1.0 annot-version=v1.0 MSEEDFLTKDGTLDHKGNPADKRITGTWKACPFIIGNECCERLAYYGMSSNLVLYFKNQLNQSSATATKNNSDWSGTCYLTPLLGAFLADAYLGRYWTIA GFSIIYVFGMTLLAMSASVPGLKPTCISKDNCHATEGQSAVFFVALYMIALGTGGIKPCVSSYGADQFDDADVEEKEHKASFFNWFYFSINVGALVASSL LVWVQENVSWGLGFGIPAIAMAIAVASFFSGTHKYRYQKPGGSPLTRICQVIVASCRKYKVSPPNDKSLLYENADSESGITGSRKLDHTKDFSFLDKAAV ETEKDHIKDTSVNPWRLCTVTQIEEFKAIIRLLPIWATGIVFAAVYSQMSNLFVLQGDTMDKRIGNSKFKISAANVSVFDTISVIFWVPIYDRLIVPAVR KITGHKNGFTQLQRMGIGLVISIFAMVYPAILELIRLKMVKEHNYYEFESVPISIFWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV ALGNYLSSLLVTIVTDVTTKGGKPGWIPDNLNYGHVDYFFWLLAVLSVVNLLAYMVIACATAGTILQLALLRLTPSLMARKRYQEAKTGIEYLKSLDYDK YLSKVGIGRNDWYFWKQIGKALACTYTIFGLGWLYNETSPLGWWTLKPRPKEEKELAHLYERREFPYPGDAEAMEEFITKGGMIGTAIGSKAGAETDKDA VNFQTELQNKKFEQEAHKLWIRMRNEVIQELQEKGFEIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	0	1
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	1.4	0.8829
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	2.0	0.8760
AT3G51710			D-mannose binding lectin prote...		Lus10025259 [exp]	3.5	0.8654
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	4.5	0.8613
					Lus10022031 [exp]	5.5	0.8722
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	5.8	0.8040
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	8.9	0.8495
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	9.2	0.8276
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	9.9	0.8353
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	12.2	0.8539

Compare expression of checked genes

Lus10018207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.