Plant FIBer expression Database

Lus10018211 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29630 1142 / 0 PY, THIC PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040694
[exp]
1311 / 0 AT2G29630 1141 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G249200
[exp]
1180 / 0 AT2G29630 1113 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Potri.009G043200
[exp]
1177 / 0 AT2G29630 1115 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01964 ThiC_Rad_SAM Radical SAM ThiC family
Representative CDS sequence
>Lus10018211 pacid=23179342 polypeptide=Lus10018211 locus=Lus10018211.g ID=Lus10018211.BGIv1.0 annot-version=v1.0
ATGGACGAGATGAAATCAGCGTTGAAATCTGAATTGGATTTTATGGATCCCTTACAGATGGCGTCAGTGCAAGCTACTGCAGCTCTCACTTCGGCTGTAT
GCAAGAAGGGGAACCATTCTGCTACGCCCACCAAGTATTCTGGCACTTCGTTTCTGCTTGGCCGCGTCACTAATTCACCTCGTTCCATCTTCTCTGGTGC
TAGAGCGACCTTGACATTTGATCCGCCCACTACTACTGATGCTGAGAGAATTAAACAGAGGAAGCATACCATTGACCCTGCCTCTCCAGATTTTGTGCCT
CTTCCATCCTTCGAAGAGTGTTTCCCCAAGAGCACAAAAGAAACAAGGGAAGTTATTCATGAAGAGTCTGGTCATGTCCTTAAAGTTCCTTTTCGCCGTG
TCCACTTGTCAGGGGATGAGCCCAGTTTTGATAACTATGACACTAGTGGTCCTCAGAATATTGACCCGCGTTTAGGACTTCCTAAACTCCGGAAAGAATG
GATCGACAGGAGAGACAAGCTTGGTGGACCAAGATTCACGCAGATGTACTATGCAAAGCAGGGCATTATAACTGAGGAAATGTTATACTGTGCTACTCGT
GAAAGGCTTGACCCAGAGTTTGTCAGGTCAGAGGTCGCTAGAGGGAGAGCAATCATCCCTTCCAACAAAAATCACCTTGAGCTTGAGCCCATGATAGTCG
GAAGGAACTTTTTGGTCAAAGTTAATGCAAACATTGGAAACTCAGCTGTTGCAAGCTCTATTGAGGAAGAAGTTTACAAAGTTCAGTGGGCTACGATGTG
GGGTGCTGATACTGTTATGGATCTCTCTACTGGCCGCCATATTCATGAGACCCGGGAATGGGTTTTGCGCAACTCAGCTGTTCCAGTTGGTACAGTTCCC
ATCTATCAAGCACTTGAAAAGGTTGATGGGATTGCTGAAAATCTTACCTGGGAGGTCTTCAGAGACACCCTGATTGAACAAGCTGAGCAGGGTGTAGACT
ACTTTACAATACATGCTGGTGTACTCCTGCGATATGTCCCCCTAACAGCAAAGCGCATGACTGGAATTGTTTCTCGTGGAGGATCGATTCATGCAAAGTG
GTGCTTAGCTCATCACCAGGAAAACTTCGCATATGATCATTGGGATGATATTCTCGATATCTGCAATCAGTATGATGTATCTTTGTCGATTGGTGACGGA
CTTAGACCTGGATCCATATATGATGCCAATGACACTGCTCAATTTGCAGAGCTCTTGACACAGGGTGAGCTAACCCGTAGAGCTTGGGTGAAGGATGTTC
AGGTAATGAATGAAGGGCCGGGGCATATCCCAATTCACAAGATCCCAGAGAACATGCAGAAACAGCTAGAATGGTGCAATGAAGCGCCGTTCTACACTCT
TGGACCACTGACAACTGACATTGCTCCTGGATATGATCACATCACCTCTGCCATTGGTGCTGCCAATATTGGAGCTCTGGGAACTGCGCTTCTGTGTTAC
GTCACCCCAAAGGAGCACCTTGGCCTGCCGAACAGGGATGACGTGAAGACTGGGGTTATTGCATACAAAATATCCGCTCATGCTGCTGACTTGGCTAAAG
GCCATCCTCATGCTCAAGCCTGGGACGATGCATTAAGCAAGGCGAGATTTGAGTTCAGATGGATGGACCAGTTTGCTTTATCTTTGGACCCCATGACTGC
CATGTCCTTCCATGATGAAACACTGCCTTCAGACGGTGCGAAAGTAGCCCACTTTTGTTCAATGTGCGGGCCTAAGTTCTGCTCCATGAAGATAACAGAG
GATGTCCGCAAGTATGCCGAGGAGCATGGCTATGGTAGTGCAGAAGAAGCTGTGCAGCAAGGTATGGCTGCCATGAGCGCTGAGTTCCTGGCTGCTAAGA
AGACCAACAGTGGTGAACAGCACGGTGAAATTGGTGGAGAAATCTACGTTCCCGCCAAGTAA
AA sequence
>Lus10018211 pacid=23179342 polypeptide=Lus10018211 locus=Lus10018211.g ID=Lus10018211.BGIv1.0 annot-version=v1.0
MDEMKSALKSELDFMDPLQMASVQATAALTSAVCKKGNHSATPTKYSGTSFLLGRVTNSPRSIFSGARATLTFDPPTTTDAERIKQRKHTIDPASPDFVP
LPSFEECFPKSTKETREVIHEESGHVLKVPFRRVHLSGDEPSFDNYDTSGPQNIDPRLGLPKLRKEWIDRRDKLGGPRFTQMYYAKQGIITEEMLYCATR
ERLDPEFVRSEVARGRAIIPSNKNHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWVLRNSAVPVGTVP
IYQALEKVDGIAENLTWEVFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRMTGIVSRGGSIHAKWCLAHHQENFAYDHWDDILDICNQYDVSLSIGDG
LRPGSIYDANDTAQFAELLTQGELTRRAWVKDVQVMNEGPGHIPIHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCY
VTPKEHLGLPNRDDVKTGVIAYKISAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSDGAKVAHFCSMCGPKFCSMKITE
DVRKYAEEHGYGSAEEAVQQGMAAMSAEFLAAKKTNSGEQHGEIGGEIYVPAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10018211
[exp]
0 1
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10040694
[exp]
1.0 0.9315
AT2G39290 PGP1, PGS1, PGP... phosphatidylglycerolphosphate ... Lus10030301
[exp]
3.2 0.8728
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10015287
[exp]
7.5 0.8767
AT1G07200 Double Clp-N motif-containing ... Lus10028281
[exp]
8.7 0.8773
AT2G20680 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl ... Lus10018598
[exp]
10.1 0.8691
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10028480
[exp]
10.2 0.8659
AT5G55710 AtTic20-V translocon at the inner envelo... Lus10031781
[exp]
12.5 0.8252
AT2G39510 nodulin MtN21 /EamA-like trans... Lus10029464
[exp]
12.7 0.8152
Lus10040811
[exp]
13.0 0.8777
AT1G49470 Family of unknown function (DU... Lus10023842
[exp]
13.4 0.8445

Lus10018211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.