Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07320 325 / 2e-112 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) AT2G20060 100 / 2e-24 Ribosomal protein L4/L1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040693 [exp] 490 / 5e-176 AT1G07320 334 / 2e-114 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10005427 [exp] 100 / 6e-25 AT2G20060 390 / 3e-138 Ribosomal protein L4/L1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221100 [exp] 375 / 7e-132 AT1G07320 343 / 4e-119 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Potri.004G004800 [exp] 112 / 6e-29 AT2G20060 465 / 1e-166 Ribosomal protein L4/L1 family (.1) Potri.006G270501 [exp] 64 / 4e-13 AT2G20060 131 / 3e-39 Ribosomal protein L4/L1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10018212 pacid=23179396 polypeptide=Lus10018212 locus=Lus10018212.g ID=Lus10018212.BGIv1.0 annot-version=v1.0 ATGTCAGCCACCGTGACAAGACCGCCGACGGCGGCTCTATCCAGCTTCTCCTCCTCATTCTTCAGCTGCTCATCCAGAATTCAGCTGCAGAAGCTGATTC CACTCTCCAATCGAAGATCCAATTCCACAAAATTCACAATCTCCTGCGAAGTCGCGACCCTCCCGATTTTCAACTTCACCGGCGAGAAGGTCGGCGAAAC AGTCCTCGACATAAAATCCGCGCCTCCAGAGACCGCAAAAGCAGTCGTCCACCGAGGAATCATAACCGACCTCCAGAACAAGCGTCGAGGGACGGCGTCG ACGCTCACTCGCTCCGAAGTAAGAGGCGGAGGGAAGAAACCCTACCCGCAGAAGAGCACGGGTCGGGCGCGTCGCGGTTCGATGAGGACGCCGCTCCGAC CGGGAGGAGGGGTGATATTCGGGCCTCGGCCAAAGGACTGGTCGATAAAGATAAACAGGAAGGAGAAGCAGCTGGCGATGTCAACGGCGCTGGCGAGCGC GGCGGAGAGCATGATATGCGTGGAGGAGTTCGGGGAGGAGTTCGAGAAGCCGAGGACCAAGGACTTCATCGCGGCGATGGCGAGGTGGGGGCTTAATCCG AAGGAGAAAGTGATGTTTCTGATGATGGATGTGAACGATAATGTGGGGCTTTCGGGGAGGAACATTGGGACGTTGAAGATGCTGACGCCGAGGACGCTGA ACCTGTTTGATATCTTGAATTCGGATAAGCTTGTGTTGACTCCGGATACTGTGGATTTCTTGAACGGGAGGTATGGAGAAGGTGATTATTTTGAGGAAGA GGAAGAGGGAGATGAGTTTGAGTTTGAAGGAGAAGATGCAGCTGAAGGTTAG
AA sequence Show only first row Show all	>Lus10018212 pacid=23179396 polypeptide=Lus10018212 locus=Lus10018212.g ID=Lus10018212.BGIv1.0 annot-version=v1.0 MSATVTRPPTAALSSFSSSFFSCSSRIQLQKLIPLSNRRSNSTKFTISCEVATLPIFNFTGEKVGETVLDIKSAPPETAKAVVHRGIITDLQNKRRGTAS TLTRSEVRGGGKKPYPQKSTGRARRGSMRTPLRPGGGVIFGPRPKDWSIKINRKEKQLAMSTALASAAESMICVEEFGEEFEKPRTKDFIAAMARWGLNP KEKVMFLMMDVNDNVGLSGRNIGTLKMLTPRTLNLFDILNSDKLVLTPDTVDFLNGRYGEGDYFEEEEEGDEFEFEGEDAAEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10018212 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	2.0	0.9549
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	3.2	0.9353
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10007589 [exp]	3.2	0.9251
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	6.2	0.9383
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	6.9	0.9472
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	9.4	0.9365
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	13.7	0.9265
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	13.7	0.9143
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	16.7	0.9199
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	17.0	0.9286

Compare expression of checked genes

Lus10018212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.