Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07310 93 / 3e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 60 / 7e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 42 / 0.0002 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040692 [exp] 141 / 8e-41 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 114 / 2e-30 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039259 [exp] 67 / 5e-13 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 63 / 2e-11 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 47 / 4e-06 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 46 / 1e-05 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 42 / 0.0002 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 41 / 0.0003 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249300 [exp] 109 / 1e-28 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G043300 [exp] 105 / 2e-27 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 87 / 4e-20 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 74 / 2e-15 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 44 / 5e-05 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G203000 [exp] 42 / 9e-05 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10018213 pacid=23179310 polypeptide=Lus10018213 locus=Lus10018213.g ID=Lus10018213.BGIv1.0 annot-version=v1.0 ATGGGTTCCTACATTCCGTTCGAGCTGGAGGTGACGATAGTCTCGGCGAAGCATCTGAAGAACGTGAACTGGAAGAGCGGCGATCTGAAGCCCTACGCGA TCATATACCTCGACGACTCCGATCACAAGCTAGCAACACACGCCGACGACTACGGCTCTACTCAACCCGTATGGAACGAGCGATTCACACTCCCGGTGGA GGATTACCATAATACCCCTAACTACGCCGATTATTACGCCGGGACACCTCCGCCTCTTCCCGCGTATCCGTATATTTACTCCGGCCAGTACGGTTACTAC GCGTCGGCTTATTACCCGCCGCAACCGCCACTGCCTTCTAGGCCTTTGTACAGTCGTTCGTCCAGCTACATTCAAAGCGATCCTTCTGCTCCGGTTGAAT TATCGTCGCCTTACGATCACAAGCCTGTGCCCCCGCCGTTTCCAAAAACTTCTGGTGGCTACGGAAACTTAAGCAGTCCGTCGGCTCCGGTGGACTATTC GTGTCCTTATGGTTATGGGAAAGTTGGAGGAGGAGGAGAAGGAAGCGCCACTGAGCTCAGCCGTACTATTGGAAGGTTGAATCTTGAAGAGACAGGGAGC AACTACAAGAAGGAGAAAGCTCCTGAATTTGACAGGTACAGCTATAAGGACTATTGA
AA sequence Show only first row Show all	>Lus10018213 pacid=23179310 polypeptide=Lus10018213 locus=Lus10018213.g ID=Lus10018213.BGIv1.0 annot-version=v1.0 MGSYIPFELEVTIVSAKHLKNVNWKSGDLKPYAIIYLDDSDHKLATHADDYGSTQPVWNERFTLPVEDYHNTPNYADYYAGTPPPLPAYPYIYSGQYGYY ASAYYPPQPPLPSRPLYSRSSSYIQSDPSAPVELSSPYDHKPVPPPFPKTSGGYGNLSSPSAPVDYSCPYGYGKVGGGGEGSATELSRTIGRLNLEETGS NYKKEKAPEFDRYSYKDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07310			Calcium-dependent lipid-bindin...		Lus10018213 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	11.2	0.6263
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	23.5	0.6189
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10013099 [exp]	52.0	0.5708
AT3G14090		ATEXO70D3	exocyst subunit exo70 family p...		Lus10001113 [exp]	74.7	0.5722
AT2G04740			ankyrin repeat family protein ...		Lus10006409 [exp]	183.2	0.5196
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015182 [exp]	195.7	0.5025
					Lus10015575 [exp]	229.7	0.5113

Compare expression of checked genes

Lus10018213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.