Plant FIBer expression Database

Lus10018214 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29640 227 / 6e-74 JOSL JOSEPHIN-like protein (.1)
AT3G54130 49 / 8e-07 Josephin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040691
[exp]
114 / 7e-32 AT2G29640 75 / 3e-16 JOSEPHIN-like protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G249400
[exp]
278 / 2e-96 AT2G29640 230 / 2e-75 JOSEPHIN-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF02099 Josephin Josephin
Representative CDS sequence
>Lus10018214 pacid=23179349 polypeptide=Lus10018214 locus=Lus10018214.g ID=Lus10018214.BGIv1.0 annot-version=v1.0
ATGGAGGAGAACAGGAAGACCGAAATCTACCACGAAAGGCAAAGACTGCAATTCTGCCTCTTACACGCTCTCAACAACCTCTTTCAGGTAATAAACCAAT
CTCCCACCTTCACCTCCAAATGCATCATCAAGAATTCGTCTGAATCGTTTTTTCCAATTCAGCAAAAGGACGCATTCACTCGAGCAAACTTGAACGCAAT
CGCCGAGAAGCTGGTGCTGGACGATCCGGACAAGCAGAGCTGGACGCCGTTTTCATTGGTATTCAAGCCGCACCACAATTCCTTCACAGGAAACTACGAC
ATCAATGTCCTGATTTCGGCCATGGAAGAGAGAGGCAAGACTGTTGTTTGGCATGATAGGCGAAACGGAGCTTCCACCATTGACCTTGAAGACCCTCAGG
GGAAACTGTACGGTATTGTGCTTAACGTTCCCGTTAGAAGGTACATTGGGTTGTGGAAAGGTAGGCACTGGGTGGCCATGAGGAAAGTTGATGGTGTTTG
GTATAATTTGGATAGTGATCTCAGGCGTCCTGTCTCGTTTGAAGATAGTGAAGAGGTTAGGGTGTACTTGGATTACGTTATCAGTCATGGCTCTGAGATT
TTACTTGTCATGAATAAGCAAGAGTAG
AA sequence
>Lus10018214 pacid=23179349 polypeptide=Lus10018214 locus=Lus10018214.g ID=Lus10018214.BGIv1.0 annot-version=v1.0
MEENRKTEIYHERQRLQFCLLHALNNLFQVINQSPTFTSKCIIKNSSESFFPIQQKDAFTRANLNAIAEKLVLDDPDKQSWTPFSLVFKPHHNSFTGNYD
INVLISAMEERGKTVVWHDRRNGASTIDLEDPQGKLYGIVLNVPVRRYIGLWKGRHWVAMRKVDGVWYNLDSDLRRPVSFEDSEEVRVYLDYVISHGSEI
LLVMNKQE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G29640 JOSL JOSEPHIN-like protein (.1) Lus10018214
[exp]
0 1
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10029815
[exp]
2.2 0.7069
AT3G23610 DSPTP1 dual specificity protein phosp... Lus10041227
[exp]
14.1 0.7008
AT4G08230 glycine-rich protein (.1.2) Lus10024100
[exp]
15.6 0.7206
AT4G26055 unknown protein Lus10011865
[exp]
17.4 0.6447
AT3G23600 alpha/beta-Hydrolases superfam... Lus10000668
[exp]
18.2 0.6500
AT5G42820 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H t... Lus10008648
[exp]
22.3 0.6916
AT1G25275 unknown protein Lus10006792
[exp]
24.3 0.7170
AT1G27695 glycine-rich protein (.1.2) Lus10032855
[exp]
28.8 0.7128
AT2G04520 Nucleic acid-binding, OB-fold-... Lus10033806
[exp]
31.7 0.6876
AT5G62575 SDH7B, SDH7 succinate dehydrogenase 7B, su... Lus10004231
[exp]
34.7 0.6221

Lus10018214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.