Plant FIBer expression Database

Lus10018216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47070 37 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040689
[exp]
61 / 5e-13 AT3G47070 67 / 1e-15 unknown protein
Lus10005866
[exp]
41 / 3e-05 AT3G47070 73 / 3e-18 unknown protein
Lus10001204
[exp]
41 / 3e-05 AT3G47070 73 / 3e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G043600
[exp]
44 / 7e-07 AT3G47070 68 / 2e-16 unknown protein
Potri.001G249600
[exp]
44 / 1e-06 AT3G47070 49 / 8e-09 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11493 TSP9 Thylakoid soluble phosphoprotein TSP9
Representative CDS sequence
>Lus10018216 pacid=23179383 polypeptide=Lus10018216 locus=Lus10018216.g ID=Lus10018216.BGIv1.0 annot-version=v1.0
ATGGCTTCGCTTCCGATTTCGTTTGCTACAACTCAAGTGTTCGCAGCCACAGCAGCCAAAGGATCAGGAGGGAGCAAAGAAGAGAAGGGACCTTGGGATT
GGATCGTCGGCAACTTAATCAAGGAAGATCAGTTCTACGAGACCGACCCAATTCTCAACAAGACCGAGGAGAAGAGCGGCGGGGGGGGAGAAAGATGCCG
CCGTGGAAACGAAAGAACAGGCGGAACAGACTGCAGACAGNNNNNNNNGTCCGTGGAACTACTTCCGGCCGGAAAGGCACCACTGTCTCAGTTCCCCAGA
AGAAGAAGGGCGGCTTTGGTGGCCTCTTCGCCAAGAATTGATGACGAATCAGTTATAAAAAAAAATCATACACAAATATATTAG
AA sequence
>Lus10018216 pacid=23179383 polypeptide=Lus10018216 locus=Lus10018216.g ID=Lus10018216.BGIv1.0 annot-version=v1.0
MASLPISFATTQVFAATAAKGSGGSKEEKGPWDWIVGNLIKEDQFYETDPILNKTEEKSGGGGERCRRGNERTGGTDCRQXXXSVELLPAGKAPLSQFPR
RRRAALVASSPRIDDESVIKKNHTQIY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G47070 unknown protein Lus10018216
[exp]
0 1
AT5G16010 3-oxo-5-alpha-steroid 4-dehydr... Lus10008951
[exp]
1.0 0.9636
AT3G47070 unknown protein Lus10040689
[exp]
1.4 0.9545
AT2G37970 SOUL-1 SOUL heme-binding family prote... Lus10017193
[exp]
4.2 0.9294
AT3G16180 Major facilitator superfamily ... Lus10023663
[exp]
5.3 0.9046
AT2G35490 Plastid-lipid associated prote... Lus10030987
[exp]
6.3 0.9155
AT5G24120 ATSIG5, SIG5, S... SIGMA FACTOR 5, sigma factor E... Lus10038823
[exp]
7.2 0.9269
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Lus10026238
[exp]
7.7 0.9243
AT5G55570 unknown protein Lus10008950
[exp]
7.7 0.9244
AT3G52740 unknown protein Lus10017046
[exp]
8.5 0.9147
AT1G06040 CO BBX24, STO SALT TOLERANCE, B-box domain p... Lus10027041
[exp]
8.5 0.9115

Lus10018216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.