Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58860 803 / 0 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT4G00360 678 / 0 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT2G45970 677 / 0 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 676 / 0 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G01600 657 / 0 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT5G08250 436 / 2e-149 Cytochrome P450 superfamily protein (.1) AT5G23190 435 / 6e-148 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G13140 392 / 4e-131 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT1G13150 389 / 2e-130 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT1G24540 378 / 4e-126 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040687 [exp] 1045 / 0 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 660 / 0 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10014768 [exp] 600 / 0 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10024644 [exp] 462 / 1e-160 AT1G63710 562 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10010193 [exp] 410 / 5e-138 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 408 / 5e-137 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 379 / 8e-126 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10037157 [exp] 358 / 4e-118 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 353 / 4e-116 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043700 [exp] 852 / 0 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 828 / 0 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.003G129100 [exp] 677 / 0 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.014G085800 [exp] 674 / 0 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.007G072100 [exp] 413 / 4e-139 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 409 / 1e-137 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 395 / 2e-132 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 384 / 2e-128 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.016G031700 [exp] 372 / 7e-124 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 366 / 1e-121 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018217 pacid=23179285 polypeptide=Lus10018217 locus=Lus10018217.g ID=Lus10018217.BGIv1.0 annot-version=v1.0 ATGGAGACTCAATCCTTCCTCTTCACCGCAGTAGCCATCTCCTCGGCCTACTTGGTATGGTTCTACTTCCTAGCTCGCCGCCTCACCGGTCCCAAAGTGT GGCCGCTCTTCGGCAGCCTCCCTCACGTCTTCATGAACCGGGCCCGCTTCCATGACTGGATCGCTGACAACCTCCGCGCCACTGGTGGAGCTTCCACCTA CCAGACGTGCACTTTGCCCCTTCCATTCTTGGCCAGGACGCAAGGGTTCTACACGGTCACTTGCCACCCGAAGAACATCGAGCACATCCTTCGTACCCGG TTCGACAACTATCCCAAGGGACCGCAGTGGCAGGCGGCGTTCCACGACCTTCTGGGCCAGGGGATCTTCAACAGCGATGGTGACACATGGCTCATCCAGC GCAAGACTGCTGCGCTGGAGTTCACCACTAGGACCCTCCGTCAGGCCATGGCCCGGTGGGTCAACCGGACTATTAAGAACCGGTTGTTCGCCATCCTGAA CAACGCGTCCAGGAGCGAGACTGCCGTTGATATGCAGGATTTGCTCCTCCGTTTGACTTTTGACAATATCTGCGGGTTGACTTTCGGAAAAGATCCGGAA ACTCTGTCCCCGGAACTTCCTGAAAACCCCTTTGCCATTGCCTTCGACACCGCCACTGAAGCCACCCTCCAGCGGTTCCTCTACCCGGGGCTCTGGAGGA TCGAGAAGCTTCTCGGGATCCGAGCCGAGAAGCGGCTGGTCAGCAGCCTCCGCATCGTCCAAAACTATATGGACGAGGCGGTGGCTATACGTCAGGAAGC ACCGTCAGACGACTTGCTGTCACGTTTTTTGAAAAAACGCGATGCAAACGGGAGACTGTTCACTGTCTCCGTCCTCCAACGCATCGCGCTGAACTTCATC CTAGCAGGGCGTGACACCTCATCTGTCGCGCTCAGCTGGTTCTTCTGGCTGGTCATGAACAACCCGCGAGTGGAGGACAAAATAATAAAGGAGATGGCCA CCGTGCTGCGAGCGACACGTGGCGACAATCCAGCAAGCTGGACAGCAGAGCCCTTAACCTTCGACGAGGCAGACAAGCTCGTCTACTTAAAAGCATCCTT AGCCGAGACACTCAGGTTGTACCCATCCGTCCCCGAAGATTTCAAATACGTGGTCGAGGATGACGTGTTACCCGACGGGACAGTGGTCCCCGCTGGATCG TCGGTTACATACTCGATATACTCTGTGGGGAGGATGAAGAGCATATGGGGAGAAGATTGCTTGGAGTTCAAGCCAGAGAGGTGGATAACGGAGGACGCTC AAACCGGTGGCTACAAGATGGAGACTCCGAAAGACGGGTACAAATTTGTGGCGTTTAATGCCGGGCCGAGGACGTGCTTGGGGAAGGACTTGGCTTACTT GCAGATGAAGTCAGTGGCATCTGCGGTGCTACTCCGATATAGGTTGAGTCTCGAGCCGGGTCATCGGGTCGAGCAGAAGATGTCACTTACGTTGTTCATG AAGAATGGGCTTCGGGTGATGTTGCAGCCACGCGATCTTAGTAGCTACTGA
AA sequence Show only first row Show all	>Lus10018217 pacid=23179285 polypeptide=Lus10018217 locus=Lus10018217.g ID=Lus10018217.BGIv1.0 annot-version=v1.0 METQSFLFTAVAISSAYLVWFYFLARRLTGPKVWPLFGSLPHVFMNRARFHDWIADNLRATGGASTYQTCTLPLPFLARTQGFYTVTCHPKNIEHILRTR FDNYPKGPQWQAAFHDLLGQGIFNSDGDTWLIQRKTAALEFTTRTLRQAMARWVNRTIKNRLFAILNNASRSETAVDMQDLLLRLTFDNICGLTFGKDPE TLSPELPENPFAIAFDTATEATLQRFLYPGLWRIEKLLGIRAEKRLVSSLRIVQNYMDEAVAIRQEAPSDDLLSRFLKKRDANGRLFTVSVLQRIALNFI LAGRDTSSVALSWFFWLVMNNPRVEDKIIKEMATVLRATRGDNPASWTAEPLTFDEADKLVYLKASLAETLRLYPSVPEDFKYVVEDDVLPDGTVVPAGS SVTYSIYSVGRMKSIWGEDCLEFKPERWITEDAQTGGYKMETPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLSLEPGHRVEQKMSLTLFM KNGLRVMLQPRDLSSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	0	1
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	1.4	0.9692
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	1.7	0.9547
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	2.8	0.9680
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	4.9	0.9469
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	5.0	0.9522
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	5.3	0.9540
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	6.4	0.8709
AT5G14230			unknown protein		Lus10036990 [exp]	7.1	0.9375
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	7.4	0.9363
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	8.0	0.9426

Compare expression of checked genes

Lus10018217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.