Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29650 702 / 0 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 663 / 0 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G38060 316 / 5e-102 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 283 / 3e-89 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT5G20380 281 / 3e-88 PHT4;5 phosphate transporter 4;5 (.1) AT5G44370 217 / 7e-65 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040686 [exp] 961 / 0 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 637 / 0 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 506 / 1e-170 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10035532 [exp] 296 / 3e-94 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10040703 [exp] 286 / 5e-90 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 285 / 7e-86 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10027761 [exp] 269 / 4e-85 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10038110 [exp] 246 / 7e-75 AT5G20380 662 / 0.0 phosphate transporter 4;5 (.1) Lus10026551 [exp] 240 / 2e-73 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043800 [exp] 736 / 0 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.001G249800 [exp] 722 / 0 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 673 / 0 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.016G111000 [exp] 309 / 2e-99 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.006G062300 [exp] 303 / 1e-96 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.018G121600 [exp] 296 / 6e-94 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.001G248200 [exp] 283 / 5e-89 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G168200 [exp] 209 / 6e-62 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 172 / 6e-51 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10018218 pacid=23179344 polypeptide=Lus10018218 locus=Lus10018218.g ID=Lus10018218.BGIv1.0 annot-version=v1.0 ATGGTCCAGAAACTCAATTCCTCAGCCGCCATGAACGCTGGCTCCTACCTATACTCCTTCACGCCGCACCTCCGTCCCGCCAGCTTTTCAAGCTACCGAA AGAGCAGTACTCCTTTGGCCGCCGACCATCAAACCAGATACCTCCGGCTTCGGTTCCCCACAGCTCAAGATGTCGTGCGCCGTGAAAACGTGAAAACGTA TGCGGATGTGAAGGGCGGGAAGAAGGGGTACGGCGTCCCGGTAACAGAGCCAGCGAAGTTGAAGAACGGCGCCGTATTGCGAGATGTGGAATTGGATACT TCTGCTTCATCTGTGTCGTGGTGGGAAGAGTTTCCGAAACGGTGGACGATTGTTATAATGTGCTTCTCCGCTTTCCTCCTCTGTAATATGGACAGAGTTA ATATGAGCATCGCAATTCTTCCAATGGCTGATGAGAACAATTGGAGCCCTACTACAGTTGGTGTTATACAGTCCTCTTTCTTCTGGGGATATCTTCTAAC TCAGATTGCTGGAGGGATATTGGCTGACACTGTTGGAGGGAAGAAGGTTCTTGGTTTTGGTGTGGTGTGGTGGTCTATTGCTACTGTGCTAACTCCTATT GCTGCTAAACTTGGATTGCCTTTCCTGCTTGTTGTCCGTGCTTTCATGGGGATCGGCGAGGGTGTTGCTATGCCAGCTATGAACAACATTCTGTCGAAAT GGGTTCCGGTTTCCGAGAGGAGTAGATCATTAGCTTTGGTTTACAGTGGGATGTACCTAGGATCAGTCACTGGACTTGCCTTCTCACCGTTTCTAATTCA TCAGTTTGGTTGGCCATCAGTGTTTTTCTCCTTTGGTTCTCTTGGGACGGTTTGGTTTGCTATATGGACCACTAAGGCTTACAGCTCCCCAGCTGAGGAT CCGGACCTTCGGCCTGAAGAGAAGAAATATATCCTCGCCAGTTGCGCTTCCAAGAACACTGTTAAGACGATACCTTGGCGATTGATCTTGTCGAAACCAC CTGTGTGGGCGTTGATAGTTTGTCATTTCTGTCACAACTGGGGAACGTTCATTCTTCTGACATGGATGCCTACTTATTATCATCAAGTTTTGAAGATGAA CCTTACGGATTCTGGACTTCTCTCTGTTTTGCCTTGGCTGACAATGGCATTCTCAGCGAATTTTGGAGGATGGATTGCTGATACATTGGTCAGCAGAGGC CTTTCTGTGACAACGGTTCGCAAGGTAATGCAATCAATTGGATTTCTCGGCCCTGCTTTTTTCCTCACTCAGTTGAACCATGTTGATTCCCCTGGAATGG CTGTTCTGTGCATGGCTTGTAGTCAGGGTGCTGATGCATTCTCCCAGTCTGGCCTTTATTCCAACCATCAAGACATTGCTCCTAGATATTCTGGAGTGCT GCTGGGGCTATCCAATACCGCTGGTGTACTAGCTGGAGTCCTTGGAACTGCAGCAACCGGTTACATATTACAACATGGCTCTTGGGACAATGTATTCGAG GTATCCGTAGGGCTTTACCTGGTCGGGACAGTTGTCTGGAACCTCTTCTCGACAGGCGAGAAAATACTAGACTGA
AA sequence Show only first row Show all	>Lus10018218 pacid=23179344 polypeptide=Lus10018218 locus=Lus10018218.g ID=Lus10018218.BGIv1.0 annot-version=v1.0 MVQKLNSSAAMNAGSYLYSFTPHLRPASFSSYRKSSTPLAADHQTRYLRLRFPTAQDVVRRENVKTYADVKGGKKGYGVPVTEPAKLKNGAVLRDVELDT SASSVSWWEEFPKRWTIVIMCFSAFLLCNMDRVNMSIAILPMADENNWSPTTVGVIQSSFFWGYLLTQIAGGILADTVGGKKVLGFGVVWWSIATVLTPI AAKLGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFFSFGSLGTVWFAIWTTKAYSSPAED PDLRPEEKKYILASCASKNTVKTIPWRLILSKPPVWALIVCHFCHNWGTFILLTWMPTYYHQVLKMNLTDSGLLSVLPWLTMAFSANFGGWIADTLVSRG LSVTTVRKVMQSIGFLGPAFFLTQLNHVDSPGMAVLCMACSQGADAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGYILQHGSWDNVFE VSVGLYLVGTVVWNLFSTGEKILD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	0	1
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	1.0	0.9775
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	2.0	0.9571
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	4.2	0.9316
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	4.6	0.9456
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	5.0	0.9417
AT5G42070			unknown protein		Lus10032408 [exp]	5.7	0.9284
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	6.2	0.9270
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	7.0	0.9325
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	7.2	0.9420
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	7.3	0.9210

Compare expression of checked genes

Lus10018218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.