Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29660 289 / 1e-94 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G27240 154 / 3e-42 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 154 / 5e-42 C2H2ZnF zinc finger protein-related (.1) AT1G75710 154 / 5e-42 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G11490 116 / 8e-29 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G22560 98 / 5e-23 unknown protein AT4G12450 86 / 6e-19 unknown protein AT1G62520 78 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040685 [exp] 562 / 0 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10024333 [exp] 166 / 2e-48 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 160 / 2e-44 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 159 / 4e-44 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 157 / 2e-43 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10025632 [exp] 150 / 6e-41 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 148 / 7e-40 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018388 [exp] 120 / 3e-30 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10032250 [exp] 110 / 4e-27 AT1G62520 246 / 2e-81 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249900 [exp] 364 / 6e-124 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 342 / 2e-115 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.005G173400 [exp] 176 / 3e-50 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 157 / 2e-43 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 156 / 2e-43 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 153 / 5e-42 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.002G023200 [exp] 150 / 4e-41 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.001G415600 [exp] 150 / 5e-41 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.004G030800 [exp] 137 / 2e-36 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.003G111800 [exp] 102 / 1e-24 AT4G22560 263 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018219 pacid=23179303 polypeptide=Lus10018219 locus=Lus10018219.g ID=Lus10018219.BGIv1.0 annot-version=v1.0 ATGGCGAACATATCCTCATCAGTCCTCAACCGATTCTTTTCCCTCTTCCTCATCCTCCTCCACCTCGGCTGCTTCGTCTTCCTCTCCCGTGACCAATCAC CTTCCCACCCAACTAGAAAACGAAAATCATCATCCGACGACGACGACAAGGACAAGGACGACCATTCTCCTCCGGCAGCTTCTCGCCGGAGACGATCCTC CCCTCTACTCTCTTCCTCTTGGTCATACATTAAGCGAGTATTCACCTGCAAATCGATGTACAACTCCCCTCCGCCTCCTCTTCCACTTCCAATTTCCCCT GCTCAGACGTCCTCCGCTAGATCTTCTCAGAAATCCTCCTTATTAATCGCCACCGACGACGATGCTGATTTTCCCTCCAAAATCAGTCATCATCCGCCTC TTCCGATCAGCGCGTCGCCGGAATCCGACATCTCCTCCACTGATCGCCTCCCGCTTCGAAATGACATCTTCCCCTGCACCGTCTGCGGCGAGGTCCTCCA GAAGCCACACCTCCTCGAGCAGCATTTGGCGGTCAAGCACGCCGTGTCGGAGCTCCGAGACGGGGATTCAGGGAACAACATTGTCCGGATCATATTCAAA GCAGGGTGGAACTCTGCTCCCAAATCGCCTGAAATCCACCGGATCCTGAAGATCCACAATAGCCCCAAGATTCTGACGCGGTTTGAGGAGTACAGGGAGT TTGTCAAATCCAAAGCCTCCAAAATCTCACACGTTGCCAGCGGCGGCGGGAGAGTCAGAGACGAGCGATGCATAGCCGATGGAAACGAGCTCCTGAGATT CCACTGCGCGACATTCGTCTGCGATCTAGGTCTGAACATGGGCGGCGGATGCGGAGGAGCAGGATGGCCGACGTCGAGCCTATGCAATCAGCAGTACTGC AGCGTGTGCGGGATAATCAAGTCCGGATTCTCCCCGAAGATGGACGGGATTTCGACTCTTTCGACGAGCTGGCGGGCGCACGCGGCAATTCCGGCGGAGA TCGAGGAGGAGTTCAAGTTCATGAACATCAAAAGGGCGATGCTGGTCTGCCGGGTTATAGCCGGTCGGGTCGGGTGCGAGATGGAGGAGGCGGATAAAGA AGGAGTCGGGTATGATTCTTTGGTCGGGAGAGGAAGGGGAGGAGGAGGCGGTGGGGTCCAGCAAGGCAATCTGGACGATGAGGAGCTGCTGGTTTTTAAT CCGAAGGCTGTGCTTCCTTGCTTTGTGATTGTATATACGTGTGAAGCATGA
AA sequence Show only first row Show all	>Lus10018219 pacid=23179303 polypeptide=Lus10018219 locus=Lus10018219.g ID=Lus10018219.BGIv1.0 annot-version=v1.0 MANISSSVLNRFFSLFLILLHLGCFVFLSRDQSPSHPTRKRKSSSDDDDKDKDDHSPPAASRRRRSSPLLSSSWSYIKRVFTCKSMYNSPPPPLPLPISP AQTSSARSSQKSSLLIATDDDADFPSKISHHPPLPISASPESDISSTDRLPLRNDIFPCTVCGEVLQKPHLLEQHLAVKHAVSELRDGDSGNNIVRIIFK AGWNSAPKSPEIHRILKIHNSPKILTRFEEYREFVKSKASKISHVASGGGRVRDERCIADGNELLRFHCATFVCDLGLNMGGGCGGAGWPTSSLCNQQYC SVCGIIKSGFSPKMDGISTLSTSWRAHAAIPAEIEEEFKFMNIKRAMLVCRVIAGRVGCEMEEADKEGVGYDSLVGRGRGGGGGGVQQGNLDDEELLVFN PKAVLPCFVIVYTCEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	0	1
AT3G17120			unknown protein		Lus10017073 [exp]	1.0	0.9120
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	2.4	0.8708
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	3.2	0.8874
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	5.9	0.8074
					Lus10010492 [exp]	7.3	0.8538
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	7.4	0.8749
AT3G11590			unknown protein		Lus10013312 [exp]	9.0	0.8759
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	10.2	0.8342
AT4G14380			unknown protein		Lus10011818 [exp]	11.7	0.8292
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	17.7	0.8466

Compare expression of checked genes

Lus10018219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.