Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29670 467 / 3e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 441 / 9e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 374 / 4e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 82 / 3e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 80 / 3e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 66 / 1e-11 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 64 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 65 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040683 [exp] 999 / 0 AT2G29670 474 / 5e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005863 [exp] 635 / 0 AT2G29670 462 / 6e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001206 [exp] 632 / 0 AT1G07280 457 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10043203 [exp] 117 / 1e-31 AT2G29670 102 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025981 [exp] 101 / 9e-23 AT2G29670 146 / 8e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 81 / 1e-16 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 83 / 2e-16 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 82 / 2e-16 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 79 / 1e-15 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250100 [exp] 622 / 0 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 608 / 0 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 340 / 7e-111 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 87 / 8e-19 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 86 / 3e-18 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 86 / 8e-18 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 82 / 7e-17 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 77 / 2e-15 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 76 / 2e-14 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 76 / 2e-14 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018221 pacid=23179376 polypeptide=Lus10018221 locus=Lus10018221.g ID=Lus10018221.BGIv1.0 annot-version=v1.0 ATGGAAGCATCTACGACTTGTTTCCAGTGGACAAAGCCGATCAGACCTCACTCTCCGTCTTCCTACCGGAACCTAGCCTCTGCAGTCTCGTCGTCGAAAC GGCGATGCCGGAGGGATTGCGAGCCGACGGTCGTGTGCAGTTACGTGCATAGACTAGACACATCGGGCTCATCGAAGCTTCACAGATCGCAGTCTAGCGT GTATGTGAAGCCGAGCAGGGCACAGACGCTTAAAAGAGCTTGCAGCGCGAGCTCATCAAACGCCTTCTCTGACGAGGAGTTCTCGAAGGAAATCCAAGAG TTGGCTCTCAGATTCCAAAATTCGAACGACGGTGAACAAAGTGGTGACACCGTGGATTTCGAACTGACGCAAGGCTTTTACTCGAGCAGAGAAGATTCTG CAAATCTAGTGCATGACCACAGACGATTTCCTCTTGCATCGGTGGAGCCGCTATGGCCGGATATCAGTCGAGAGCCGCCTGTTTGGCACGATCTGATTCC GGCCAGCATTGAGCGGAAGGCAAACAGTGTGGATATCCCTCTGTCGTTACGAATGATAAAGAGAAAGATGCAGTGGCAGGAAGGATTCAGAGAGGCAGGG GAATCGGCTTGCTCTTCGGTTAAGAAGGCGTTTTCCTCCATGGTGTTTATGATTCAGGAGCTCCATAGCTACACGATGCTAATGCGAGAGTTCATCTTCA CCGAAGATTTGCAAGGAATTCTGGCCCGTGTCCAGGAAGAGATGCACGCTTCCTTTGTTTGGTTGTTTCAGCAAGTGTTCTCTCACACACCAGCACTCAT GGTGTCCGTTATGATTCTCCTCGCAAACTTCACCGTATACTCCATGAGCACTCAGGCTGCATTCGCAGCTCCACCTACTATCGAAACCGTATCAGTTCTA GAAACTCGATCCCACGAGAATGATCACTTGCTCAAGACATTTCCAATGTCCTCTCCGGGTGATAAATCAGCTTCCGTCGGAGGAATCAACGGCGGCGGCG GTGGCAAGGTTAAACCTGTCGGCAGCGGGACAGAAGGGGATGGTTCGTTTGATCGGTCTGATGAACTGAGAACTATAGTCCCTGATAGTGCCTCGGAGTT GTCAGCATTAGGGACAAGCAGAGAGGCAGAGCAGGAAATTAACATGGAAGAAAATGCTTCTGAGCTATGGAATTCAATAGTGGAGGAAGCCTCAAGCATC AAGGGTATAAACATGAATCACGATGGGATCGATAGATTCGTTTCACCGGTTGAAGCGAAAACAGAATCCGATGATTGCAAGGGCTATCTTAGAACGGAGC AACTATACCAAACGGGACTCGCCGAAGAGCCTAACAACCCTCTCCTCCTCGCCAATTATGCACAGTTCCTCTGCGTCGTTTCCCACGATTACGACAGGGC GGAGGAATACTACAAGAGGGCAATCGGAACGGAGCCGGCCGATGCAGAGGCGTTCAACAAATACGCGAATTTCTTGTGGAAAGTGAGGGACGATTTGTGG GCGGCGGAGGAGACCTTCTTGGAAGCCATCTCCGCCGATCCGACGAACCCATTCTACGCTGCTAATTACGCCAGCTTCTTGTGGACGACCGGCGGCGAGG ACACGTGTTTCCCTCTCTCGGATAATGCGCACCAAGTCTAA
AA sequence Show only first row Show all	>Lus10018221 pacid=23179376 polypeptide=Lus10018221 locus=Lus10018221.g ID=Lus10018221.BGIv1.0 annot-version=v1.0 MEASTTCFQWTKPIRPHSPSSYRNLASAVSSSKRRCRRDCEPTVVCSYVHRLDTSGSSKLHRSQSSVYVKPSRAQTLKRACSASSSNAFSDEEFSKEIQE LALRFQNSNDGEQSGDTVDFELTQGFYSSREDSANLVHDHRRFPLASVEPLWPDISREPPVWHDLIPASIERKANSVDIPLSLRMIKRKMQWQEGFREAG ESACSSVKKAFSSMVFMIQELHSYTMLMREFIFTEDLQGILARVQEEMHASFVWLFQQVFSHTPALMVSVMILLANFTVYSMSTQAAFAAPPTIETVSVL ETRSHENDHLLKTFPMSSPGDKSASVGGINGGGGGKVKPVGSGTEGDGSFDRSDELRTIVPDSASELSALGTSREAEQEINMEENASELWNSIVEEASSI KGINMNHDGIDRFVSPVEAKTESDDCKGYLRTEQLYQTGLAEEPNNPLLLANYAQFLCVVSHDYDRAEEYYKRAIGTEPADAEAFNKYANFLWKVRDDLW AAEETFLEAISADPTNPFYAANYASFLWTTGGEDTCFPLSDNAHQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10018221 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	5.0	0.7787
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10008283 [exp]	5.1	0.7352
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	9.1	0.7665
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	10.7	0.7493
					Lus10039608 [exp]	11.3	0.7416
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	17.5	0.7471
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	20.8	0.7656
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	33.7	0.7315
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	35.2	0.6831
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	36.0	0.7186

Compare expression of checked genes

Lus10018221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.