Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29700 167 / 6e-53 ATPH1 pleckstrin homologue 1 (.1) AT5G05710 166 / 2e-52 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040681 [exp] 224 / 4e-75 AT2G29700 230 / 3e-79 pleckstrin homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044500 [exp] 192 / 2e-62 AT2G29700 234 / 1e-80 pleckstrin homologue 1 (.1) Potri.001G250400 [exp] 191 / 5e-62 AT2G29700 229 / 1e-78 pleckstrin homologue 1 (.1) Potri.008G066700 [exp] 160 / 8e-50 AT5G05710 239 / 2e-82 Pleckstrin homology (PH) domain superfamily protein (.1) Potri.010G190500 [exp] 154 / 1e-47 AT5G05710 232 / 1e-79 Pleckstrin homology (PH) domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10018222 pacid=23179346 polypeptide=Lus10018222 locus=Lus10018222.g ID=Lus10018222.BGIv1.0 annot-version=v1.0 ATGGAATCCCTCCTCCGAAGCATAACCCGGCAGGACCCGAACCCGGAGGACTACACCGACATCGACTTCTGGACCAACCCGGAGCGATCCGGCTGGCTCA CCAAACAAGGCGAGTACATCCGCACCTGGAGGCGCCGCTGGTTCATCCTCAAGCAAGGGAAGCTCCTCTGGTTCAAGGACAGCATCGTCACCCGCGCCTC CGTCCCTCGCGGAGTCGTCGCCGTCGGCAAGTGCCTCACCGTCAAGGGCGCCGAGGACGTCCTCAACAAGCCTTTCGCCTTCGAGCTCTCCACCAATAAC GACACCATGTACTTCATCGCCGATTCCGCTGGCTCACCAAACAAGGCGAGTACATCCGCACCTGGAGGCGCCGCTGGTTCATCCTCAAGCAAGGGAAGCT CCTCTGGTTCAAGGACAGCATCGTCACCCGCGCCTCCGTCCCTCGCGGAGTCGTCGCCGTCGGCAAGTGCCTCACCGTCAAGGGCGCCGAGGACGTCCTC AACAAGCCTTTCGCCTTCGAGCTCTCCACCAATAACGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAAGAGTGGATCAACTCGATCGGGA GGTCGATCGTGCAGCACTCCAGGTCCGTCACCGATTCTGAAGTCGTCGATTACGACAGCACCAGGCGGTGATTTGGAATTGTTGGTTCCTCTTCTGTGGA GAATTTTCTAG
AA sequence Show only first row Show all	>Lus10018222 pacid=23179346 polypeptide=Lus10018222 locus=Lus10018222.g ID=Lus10018222.BGIv1.0 annot-version=v1.0 MESLLRSITRQDPNPEDYTDIDFWTNPERSGWLTKQGEYIRTWRRRWFILKQGKLLWFKDSIVTRASVPRGVVAVGKCLTVKGAEDVLNKPFAFELSTNN DTMYFIADSAGSPNKASTSAPGGAAGSSSSKGSSSGSRTASSPAPPSLAESSPSASASPSRAPRTSSTSLSPSSSPPITTPCTSSPIPRRRRKSGSTRSG GRSCSTPGPSPILKSSITTAPGGDLELLVPLLWRIF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	0	1
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	4.5	0.7642
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	6.0	0.7562
AT2G31305		INH3	inhibitor-3 (.1)		Lus10022410 [exp]	6.0	0.7355
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	7.1	0.7729
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	7.7	0.7462
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	9.4	0.7228
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	9.7	0.7393
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	11.8	0.7269
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	15.7	0.6963
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	23.0	0.7049

Compare expression of checked genes

Lus10018222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.