Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 928 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 588 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 547 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 544 / 0 unknown protein AT2G22410 530 / 4e-180 SLO1 SLOW GROWTH 1 (.1) AT3G12770 511 / 3e-172 MEF22 mitochondrial editing factor 22 (.1) AT2G22070 508 / 3e-170 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G48910 499 / 1e-168 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 490 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 491 / 5e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 1389 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 577 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 571 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 541 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 504 / 1e-170 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 506 / 4e-169 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031423 [exp] 500 / 2e-168 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 499 / 2e-168 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 500 / 9e-167 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 1002 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 650 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 597 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 585 / 0 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 577 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 573 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 557 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 541 / 0 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.013G044700 [exp] 535 / 3e-180 AT3G22690 582 / 0.0 unknown protein Potri.010G083700 [exp] 526 / 2e-176 AT3G22690 1050 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018223 pacid=23179260 polypeptide=Lus10018223 locus=Lus10018223.g ID=Lus10018223.BGIv1.0 annot-version=v1.0 ATGGCAACTCTGGGTCTCAATCCTCTGCCTCCGCACCTCAGCCCGTCTCCCGCCTCTGCAACCGCCACCAACGTCGGCGACCGAGCTCTCTTCCAGCAAT GTACGAGTTTTAAGCAGCTGAAGCAAATCCACGCTCAAATGCTCCGTACCAACAAACTCCACGATCCTTATGCCGCCAGCGAACTCTTCACAGCCGCTGC CTTCTATTCATTCTCCACTCTCGACTATGCCCGCAAGGTGTTCGACCAAATTCCCCAACCAAACCTCTACACGTGGAACATCCTAATTCGCGCCTTGGCT TCAAGCTCCGACCCAATGCAGAGCATCCTCGTGTTCATCCGCATGCTCCACGTCAGCCCCTTCGCTCCCAACAAGTTCACTTTCCCGGTCCTTATCAAAG CCGTTGCGGAGCTTCGTTGCTTTCTGATAGGAAAGGCTGTACATGGAATGGCGATTAAGACCTCGTTTGGGGGCGATGTGTTTGTCTTAAACTCGCTTAT ACACTTCTACGCCTCTTGCGGGCATTTGGATTTGGCTTACTTGGTGTTTGAGATAATTGAAGGTAATAATAAAGATATTGTTTCCTGGAATTCGATGGTG ACAGGGTTTGTGCAAGGTGGATATCCAGAGAAGGCTTTGGAATTGTTTCAGAGGATGGGAAATGAAGGTGTTAAACCTGATGGTGTGACAATGGTGAGTG TCATGTCTGCCTGTGCAAAGACGATGAATTTGACTCTTGGGAGAAAGGTTTGCGATTATATCGATAGAAACGGGATGATGAGGAATCTGAATGTGTGCAA TGCGATGATTGATATGTTTGTGAAATGTGGGGAGGTGGAGATTGCAAAAGGATTGTTTGATAACATGGAGAAAAAAGATGTTGTTTCGTGGACAACAATG ATAGATGGCTATGCGAAAATGTCCGAACATGGAATAGCTCGAGATATTTTCGACTCCATGCCTAGGAAAGATATTCCCGCCTGGAATGTTCTGATATCTG GATATGAACAGAGTGGCAGGCCAAAGGATGCTCTGGCGATTTTCCGCGAGTTGCAGCTGACCAAGTCGGGTGCTAGACCAGACCAAGTTACGCTTTTGAG CACTTTGTCGGCTTGTGCTCAGTTGGGAGCGATGGATATAGGCGAGTGGATCCATGGATACATCAAGAAGGAAGGAATTTGTCTTAATCGTAATCTCGCA ACTTCTCTTATTGATATGTACTCCAAGAGTGGTGATGTTGAAAAGGCGATTGAAGTATTCCATTCGATTGGCAACAAAGACGTGTTTGTTTGGAGTGCGA TGATTGCGGGATTGGCAATGCATGGCCGCGGGGAAGCTGCTATGGAGTTGTTCCTTGATATGCAAGAAACTCAGGTGAAGCCGAATTCTGTAACTTTCAC TAATTTGTTATGCGCTTGTAGTCATTCGGGACTGGTTGATGAAGGGAAGAGATTGTTTGATGAAATGGAGCGAGTCTATGGCGTTGTGCCCAAGACAAAG CATTATTCGTGTATGGTTGACGTTCTTGGACGAGCCGGTCATTTGGAAGAGGCACTGAAGTTTATAGAAGGCATGCCATTAGCTCCGAGTGCTTCGGTTT GGGGAGCTTTGCTCGGTGCTTGCTGCATTCATGGCAATCTCGAGCTTGCTGAGAAGGCATGTAGCCATTTGCTCGAGATCGAACCTCGAAATCACGCGGC CTATGTACTCTTATCGAACTTATATGCCAAAACCGGGAATTGGGAAGGTGTCTCCGAGTTAAGGCAGCGAATGAGAGATTCTGGACTGAAGAAAGAAACG GGTTGCAGCTCGATCGAGATCGATGGTACCGTTCACGAGTTCATCGTGGGAGATAACGCACATCCCCTGTCGAGAGACATCTACGCGAAGTTGGACGAGA TCATGGATCGACTAAGATCGCAAAGTTATGTGGCGAACAGGTCCCACATACTGCAATTTGTGGACGAAGAAGACATGAAGGAGAAGGCTCTTAAACTTCA CAGCGAGAAGTTGGCGATTGCTTTCGGGCTCATCAGGGCAGATTCTCAACAGGCTATCAGGATTGTGAAGAACCTTCGAGTTTGCGGGGATTGTCACACA GTTGCGAAGCTGATATCTAAGGTGTACGGAAGGGATATTGTGCTGAGGGATCGGTACAGGTTCCACCATTTCAGTGGAGGGCATTGCTCGTGTCGAGATT ACTGGTGA
AA sequence Show only first row Show all	>Lus10018223 pacid=23179260 polypeptide=Lus10018223 locus=Lus10018223.g ID=Lus10018223.BGIv1.0 annot-version=v1.0 MATLGLNPLPPHLSPSPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFYSFSTLDYARKVFDQIPQPNLYTWNILIRALA SSSDPMQSILVFIRMLHVSPFAPNKFTFPVLIKAVAELRCFLIGKAVHGMAIKTSFGGDVFVLNSLIHFYASCGHLDLAYLVFEIIEGNNKDIVSWNSMV TGFVQGGYPEKALELFQRMGNEGVKPDGVTMVSVMSACAKTMNLTLGRKVCDYIDRNGMMRNLNVCNAMIDMFVKCGEVEIAKGLFDNMEKKDVVSWTTM IDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKDALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKEGICLNRNLA TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAMELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTK HYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSHLLEIEPRNHAAYVLLSNLYAKTGNWEGVSELRQRMRDSGLKKET GCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMDRLRSQSYVANRSHILQFVDEEDMKEKALKLHSEKLAIAFGLIRADSQQAIRIVKNLRVCGDCHT VAKLISKVYGRDIVLRDRYRFHHFSGGHCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10018223 [exp]	0	1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	1.0	0.9069
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	9.5	0.7801
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	20.2	0.8510
AT5G52960			unknown protein		Lus10039319 [exp]	25.0	0.8382
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	25.5	0.7908
AT4G28740			unknown protein		Lus10022845 [exp]	28.6	0.8171
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	37.1	0.8358
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	38.3	0.8336
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	38.4	0.8364
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	47.0	0.8333

Compare expression of checked genes

Lus10018223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.