Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003349 [exp] 230 / 3e-72 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040816 [exp] 194 / 2e-60 ND / Lus10013987 [exp] 160 / 5e-46 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 142 / 3e-40 ND 55 / 7e-08 Lus10040838 [exp] 131 / 5e-36 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10004929 [exp] 96 / 8e-24 ND / Lus10013907 [exp] 91 / 7e-22 ND / Lus10002600 [exp] 91 / 1e-21 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10011965 [exp] 86 / 1e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018225 pacid=23179384 polypeptide=Lus10018225 locus=Lus10018225.g ID=Lus10018225.BGIv1.0 annot-version=v1.0 ATGTCGTGTCTTAAAGGTTTGGTGAACGAGACATCAAAGTGTGGTAACTATCAAGTTGAGTGCTTTTATCGACCTTTTCTGCATTCACAAAAGCCGTCTT CTTCAATCCACTTCGCTCTGAAGAAAAGAATGCCATATTGTGCTGCAGACTTGACAACACAAGAGCTAGAGTTGTTCGCCGAAGTAGAAGGGAAGCCGGA TGTCTATCAGCTTCAGGTGTTCCAGCCAAGGGTTTCTGCCCTCCCTCCCTTGCTCAATATTTGCAAGTTTATGAAATCAGCATTTTACAAGGGCTATATG AAAAACGTCACTGAAGAGGCAACTCTGGACATGGTGGCCGAAATCATTCAGCGGAGGAAGAAGAAAATGAGCCAAATTGTTTTAAGCAGAAGGCAGCTGC CTCGTTTCCCATTTGACAAGGAATTGGATGAACTAGAAATTGTTTCGAGACTTGTCGAAGCTGATATGGTCACTATTGGCAAACAGAAGGAAGAAGCGAT GTGCAAAACGTCCACATAG
AA sequence Show only first row Show all	>Lus10018225 pacid=23179384 polypeptide=Lus10018225 locus=Lus10018225.g ID=Lus10018225.BGIv1.0 annot-version=v1.0 MSCLKGLVNETSKCGNYQVECFYRPFLHSQKPSSSIHFALKKRMPYCAADLTTQELELFAEVEGKPDVYQLQVFQPRVSALPPLLNICKFMKSAFYKGYM KNVTEEATLDMVAEIIQRRKKKMSQIVLSRRQLPRFPFDKELDELEIVSRLVEADMVTIGKQKEEAMCKTST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018225 [exp]	0	1
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	3.0	0.9993
					Lus10005830 [exp]	4.2	0.9993
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	4.9	0.9855
					Lus10009618 [exp]	5.2	0.9993
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016660 [exp]	5.4	0.9793
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	6.0	0.9993
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	6.7	0.9993
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	7.3	0.9993
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	7.9	0.9993
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	8.5	0.9991

Compare expression of checked genes

Lus10018225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.