Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 124 / 4e-32 Carbohydrate-binding-like fold (.1.2) AT5G26570 49 / 4e-06 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002495 [exp] 136 / 4e-35 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 134 / 5e-34 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 129 / 7e-32 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 123 / 5e-30 AT2G40070 288 / 5e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044800 [exp] 164 / 3e-46 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.016G114500 [exp] 139 / 2e-36 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 137 / 1e-35 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.002G234500 [exp] 43 / 0.0004 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 43 / 0.0005 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10018226 pacid=23179305 polypeptide=Lus10018226 locus=Lus10018226.g ID=Lus10018226.BGIv1.0 annot-version=v1.0 ATGAGAGAAAAAATAGAGGCATTAACTAAGGTATCCTTCCTTCCCAAGCAATGTCTTGGCAAAGCTCAGCTTCGTATCCCATACCCCTCCAGGATTGCTC CTACGGATTCCATGTTCTTTGCAGTTTCCTCTCCAATCGTCCAGCCTGACGAAAACGAAATCAATTCGATTCGTGGCAAGGATGCACGAACTTTTGTCAA GTCTAATTTGACACATGAAGCAGATGTGGGCATAGAGTTTGATACTGATATGCCCGGCATCCAACAATTATGGTCATCCGAGATTGTTCGTGTGAAGTTT CAGTTGCAAAAGGATTGCATGTATGGCGAGCAATTCCTCCTGGTCGGAAACCATCCGATGATTGGTTCGAGGGATCTGAAAAATGCCGTTCCGCTGAGTT GGTCAGATGGGAACATATGGAGCGTTGAGATGGATTTGCCCGTCAACACGACGATGCAATACAAGTTCATCCATAGAGGAAGACATGGGGAACAAATTTG GCAGCCTGGCTCGGACAGAATTCTGAAAACATGGGAAAACATTAATATGATAATCGTGACGGAAGACTGGGAAAATGCTGAAGAACAGAAGATCATGGAG GGCAAACAAGTGTTGAATCAACTAGAGGAACTAAGTTTCCAGCAGGAGATTACGGGGATTGAGAATGTGATGAAGCAAAGTGAGGATTGGGAGACGGGGT TAAATCCAAAGGTTCAGGGCGATCAAGGGATGAATCGATTTGAAGAGCTTACAATCGAGCAAAATTTTGCTTTGATGTGTGCTTCAACTGCTTCTTTTAA CCAAGGTCTGGTGGATAGCCCTGATAACAGACGGCTCGAATCGGAAGACCAGGTTCAAACCCACAAAATAAAGGGCCAGATGAAGAACAATAGCCAGAAT GAAAAGTCTATAACGAGTTACCAGGAGGGTTCTGCTCGGTTAGACGATCTGTTCCCTGAAAAAGTCGAGTCAACCGAAGAAGCAGCTTCCCAGGAACTCG GATCATCCATTACTGATGTCATGATCGGAAATGATGACAGAACAGCTGATTTCACCTCAGACAACTTCTCTACATTAGCTACGCAAACACCTTTGGGGGG TTCAAACAATCTATGTATACATACATGTACTTGTAACGGTATTTATACTTTGAAAAATGTTGAAGATGAAACACAAATACCGATGATACACATTGAAGCA GTAACAAAATTCCATAAGCCGTCAGCACAAAATTTTCCTTTCTGGATTACCAAGCATTACAAAAACCTGATTTAA
AA sequence Show only first row Show all	>Lus10018226 pacid=23179305 polypeptide=Lus10018226 locus=Lus10018226.g ID=Lus10018226.BGIv1.0 annot-version=v1.0 MREKIEALTKVSFLPKQCLGKAQLRIPYPSRIAPTDSMFFAVSSPIVQPDENEINSIRGKDARTFVKSNLTHEADVGIEFDTDMPGIQQLWSSEIVRVKF QLQKDCMYGEQFLLVGNHPMIGSRDLKNAVPLSWSDGNIWSVEMDLPVNTTMQYKFIHRGRHGEQIWQPGSDRILKTWENINMIIVTEDWENAEEQKIME GKQVLNQLEELSFQQEITGIENVMKQSEDWETGLNPKVQGDQGMNRFEELTIEQNFALMCASTASFNQGLVDSPDNRRLESEDQVQTHKIKGQMKNNSQN EKSITSYQEGSARLDDLFPEKVESTEEAASQELGSSITDVMIGNDDRTADFTSDNFSTLATQTPLGGSNNLCIHTCTCNGIYTLKNVEDETQIPMIHIEA VTKFHKPSAQNFPFWITKHYKNLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01260			Carbohydrate-binding-like fold...		Lus10018226 [exp]	0	1
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10037227 [exp]	1.4	0.7151
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	10.1	0.6879
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	20.4	0.6331
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	22.7	0.6586
					Lus10006537 [exp]	23.6	0.6041
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	27.5	0.6473
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	37.1	0.5872
					Lus10006584 [exp]	38.6	0.5879
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	41.2	0.6348
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	41.4	0.6402

Compare expression of checked genes

Lus10018226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.