Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64780 535 / 0 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 528 / 0 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 528 / 0 AMT1;4 ammonium transporter 1;4 (.1) AT3G24300 524 / 0 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 520 / 0 AMT1;5 ammonium transporter 1;5 (.1) AT2G38290 53 / 2e-07 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023705 [exp] 522 / 0 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004403 [exp] 500 / 2e-175 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004760 [exp] 326 / 2e-109 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10040677 [exp] 308 / 2e-104 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10000823 [exp] 218 / 9e-69 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10003096 [exp] 209 / 2e-65 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1) Lus10004761 [exp] 148 / 1e-42 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1) Lus10028397 [exp] 66 / 2e-11 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10041851 [exp] 59 / 2e-09 AT2G38290 430 / 2e-149 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045200 [exp] 701 / 0 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.019G023600 [exp] 542 / 0 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.010G063500 [exp] 541 / 0 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255000 [exp] 533 / 0 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.008G173800 [exp] 527 / 0 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 520 / 0 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.013G049925 [exp] 205 / 1e-63 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.005G106000 [exp] 59 / 3e-09 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 54 / 1e-07 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 51 / 1e-06 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10018229 pacid=23179359 polypeptide=Lus10018229 locus=Lus10018229.g ID=Lus10018229.BGIv1.0 annot-version=v1.0 ATGGAAGTCGCCTGGGAACAAAGTGTTACAGAAGCCATCAACGCCATTTACCTTCTCTTCTCGGCCTACTTGGTTTTCATGATGCAGCTTGGTTTCGCCA TGCTATGTGCTGGCTCGGTCAGGGCCAAGAACGCCCTCAACATTATGCTCACTAATGTCGTTGATGCCGTGGTAGGTAGCATCTCCTACTACCTCTTTGG CTTTGCATTTGCATTTGGTACTGGTCCCAATTCCAACCCGTTCATTGGCACAACCTTCTTTGCTCTCAAAGATGTTCCCAACTCCGATTTCGACTATGCT TATTTCCTCTATCAATGGGCTTTTGCTATAGCTGTGGCTGGTATCACTAGCGGCTCCATAGCTGAAAGAACCCAGTTTGGTGCTTACCTTGTCTACTCGT TTTTCCTTACTGGGTTCGTTTACCCAATCGTGGCTCATTGGGTTTGGTCGTCAAGTGGTTGGTTGAGTTCTAGTTCATCAAGCCAGTTGTTATTGGGGTC CGGTGCTATCGACTTTGCTGGTAGCGGTGTGGTCCATTTGGTGGGTGCGACAGCTGGCTTTTGGGGCGCCTTCATTGAAGGTCCTCGGGTCGGAAGGTTC GATGCGTTTGGGAAACCGGTTCCGATGCGTGGCCATAATGCTACTCTAGTGGTACTAGGGACTTTTCTCTTATGGTTTGGCTGGTTCGGATTCAATCCCG GGTCGTTCACTAAAATCCTCGTCGCCTATCCTAGCACAGCCGGTCAGGGCAACTGGACCGGAGTGGGTCGGACTGCAGTAACAACCACGTTGGCCGGTTC GACAGCTGGACTCGTAACCCTGTTCGGACGAAGGCTATTAGTCGGTCATTGGGATGCAATGGACGTCTGTAATGGTCTACTCGGTGGGTTTGTAGCAATC ACTTCCGGTTGCGCAGTAGTAGAGCCATGGGCCGCAATTGTGTGCGGGTTTTTTGCCGCTTGGATCCTAATAGGGCTCAACATCTTGGCATTGAAGCTAC AATTCGACGATCCTTTAGAAGCCACACAACTTCATGGTGGATGTGGAGCGTGGGGGTTGATATTCACCGGACTCTTCGCGAAGGAGGAGTTTGTGGTTCA AGCCTATGATTCCGGATTGGCGGGAGTTTCTCGACCTTATGGGCTTCTGCTGGGTGGGGGATGGAACCTGATCATTTCCCAAGTTATTGAACTGGTTGTG ATCATTGGCTGGGTTAGCGTGACGATGGGGCCTATGTTTTATGCGCTACACAAGCTGAGCATTCTGAGGATATCGATCGAAGAAGAAGTTGCAGGGCTTG ATGTCTCGAGCCATGGTGGGTATGCGTACGTTAATCATGGAGACGAAGACCAGCCTCGTGGCTATGGAGACTATATGCGTATGCGAGGTGGAGAGCAATC GTGA
AA sequence Show only first row Show all	>Lus10018229 pacid=23179359 polypeptide=Lus10018229 locus=Lus10018229.g ID=Lus10018229.BGIv1.0 annot-version=v1.0 MEVAWEQSVTEAINAIYLLFSAYLVFMMQLGFAMLCAGSVRAKNALNIMLTNVVDAVVGSISYYLFGFAFAFGTGPNSNPFIGTTFFALKDVPNSDFDYA YFLYQWAFAIAVAGITSGSIAERTQFGAYLVYSFFLTGFVYPIVAHWVWSSSGWLSSSSSSQLLLGSGAIDFAGSGVVHLVGATAGFWGAFIEGPRVGRF DAFGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSFTKILVAYPSTAGQGNWTGVGRTAVTTTLAGSTAGLVTLFGRRLLVGHWDAMDVCNGLLGGFVAI TSGCAVVEPWAAIVCGFFAAWILIGLNILALKLQFDDPLEATQLHGGCGAWGLIFTGLFAKEEFVVQAYDSGLAGVSRPYGLLLGGGWNLIISQVIELVV IIGWVSVTMGPMFYALHKLSILRISIEEEVAGLDVSSHGGYAYVNHGDEDQPRGYGDYMRMRGGEQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10018229 [exp]	0	1
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	1.4	0.9135
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	2.8	0.8939
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005967 [exp]	2.8	0.8689
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	7.1	0.8826
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	7.7	0.8925
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	11.2	0.8737
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	11.5	0.8744
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	14.6	0.8835
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	20.2	0.8103
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	22.8	0.8554

Compare expression of checked genes

Lus10018229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.