Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29940 2051 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT1G15520 1486 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G59870 1478 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1477 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1474 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G66950 1416 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1392 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT2G26910 1362 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G53480 1337 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1333 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020550 [exp] 2027 / 0 AT2G29940 1962 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10014150 [exp] 1457 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10041668 [exp] 1448 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 1442 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10037562 [exp] 1437 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10024061 [exp] 1424 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1411 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1404 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1396 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251100 [exp] 2130 / 0 AT2G29940 2081 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Potri.001G189500 [exp] 1494 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.001G048700 [exp] 1488 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1478 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1476 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1467 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1462 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G049600 [exp] 1458 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.008G024400 [exp] 1457 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.018G032900 [exp] 1452 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10018230 pacid=23179274 polypeptide=Lus10018230 locus=Lus10018230.g ID=Lus10018230.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCGACGGGAGCGAGTTCTTCGAGCTGGAGATCGATCCGGTGAGGGATTCTTTTGCTCGCCAGTCGAATGCTGAATCTTCCAGAGATGACG AGGATGAGCTGATCTGGGAGGCCATCGCCAGGCTTCCGACTCAGAAGCGGGACAGGTTCGCCGTGTTGAGGAGGTCCCCTTCCGAAAGAGAGCTACTGCA CGGGCAGCATCAGGAGCAGTTCACTGAGACGATCGACGTACGGAAACTCGATCGCGCTGGGAGAGAGCTTGTCGTGAATAAGGCTCTTGCTACTAATTCC CAGGACAATTACAAGCTTCTATCCGCCATCAAGAAACGCCTCGATAGGGTAGGCATTCAGGTCTCAAATGTTGAAGTAAGGTTCGATAACTTGAACATCG TCGCCAATGTTCAAATTGGATCAAGAGCTTTGCCTACTCTCATCAACGCCGCCCGTGACACAATTGAGGATTTATTTACCAGTTTACGATTATATCGACC AAACAGATATCCATTAACTATTCTTGATGAAGTCAACGGCATTTTAAAACCAGGAAGAATGACATTGCTCCTGGGACCGCCAGGCTCAGGGAAATCAACT TTGCTAAAAGCTCTCGCAGGAAAACTCGACGAGAACCTAAAGGTAACTGGCAGTGTCACATACAATGGACAGAATCTTAATAAGTTCCATGTCCAAAGGA CTTCTGCATACATCAGTCAAACGGACAATCATATTGCTGAGCTTACTGTACGAGAAACCTTGGATTTCGCTGCTCGTTGGCAAGGAGCAAGTGAAGATTT TGCAGGCAACATGAAACATCTAGTCCAACTAGAAAAGGAAAAAAATATACGTCCAAGCCCAGAGATTGATGCCTTTATGAAGGCATCGTCTGTTCGTGGC AAAAAGCATAATATTTCGACAGACTATATCCTGAAAGTACTTGGACTAGATGTATGTTCCGAGACCCTTGTTGGTAGTGACATGCTCAGGGGTGTCTCAG GTGGCCAAAAGAAGAGGGTTACCACGGGGGAAATGATTGTTGGACCAAGGAAAACTCTTTTCATGGATGAGATATCTACTGGACTTGATAGCTCTACAAC CTACCAAATTGTAAAATGCATTGGCAACTTTGTTCATTTGATGGAAGGAACTGTGTTGATGGCTCTTCTTCAGCCTCCTCCAGAGACATTCGATCTGTTT GATGACCTGATACTATTGTCCGAGGGGTACGTTGTGTATGAAGGACCTCGAGCAGAAGTGGTAAGGTTCTTTGAGTCGCTTGGATTCCAGCTTCCTCCTA GGAAGGGTGTGGCAGATTTCCTTCAGGAGGTGACCTCTAAGAAAGATCAAGCTCAATATTGGGCCGATCCTTCCAAATCATATGTTTTCATTTCCGCTCA GGAAATCGCAAGAGCTTTTAAGGACTCTGGATTTGGGAGGTCTCTGAGCTCATCTGTCAATGTTCCATATGACAAAGCCAAGGACCATCCTGAAGCATTG GCCAAGACGAAATATGCTGCACCGAGGTGGGAACTCCTGAAGACATGCTTTGCAAGGGAGATGTTGCTTATCACCCGGCATCGATTCCTTTATATATTTA AGACCTGTCAGGTCGCTTTTGTTGGGTTTGTCACATGCACAATCTTCAACAGGTCAAGATTGCATCCTGGAAGCGAGATAGAAGGGAACCTCTATCTCTC ATGCCTTTTCTTTGGGCTGGTGCACATGCTGTTTAATGGATTTTCTGAGCTATCACTCTTAATGTTTCGACTGCCAGTTTTCTATAAGCAACGAGATAAT AGGTTTCATCCGGCATGGGCTTGGTCTCTGGCTAGTTTCATGCTACGCGTTCCGTATTCCATTCTTGAAGCTATTATATGGTCTCTTATTGTCTACTACA GTGTTGGCTTTTCACCTGAGATGTGGAGATTCTTCCGGTTCATGTTTCTGCTGTTTTCCGTACACCAAATGGCCTTAGGTGTCTTTCGTCTAGTCGCTGC AGTTGCACGGGATATGGTGATTGCCAACACTTTTGCTTCGGCTTGTCTGTTGATTACATTCTTGTCGGGTGGTTTTATTATTCCAAAGGATATGATCAAG TCATGGTGGGCTTGGGCGTTTTGGTTATCACCACTGACATATGCTCAACGTGCAATTTCTGTCAATGAGTTTGCTGCTGATAGGTGGATGAAGAAATCAG CTACTGGAAATGATACGATTGGTTACAACATTCTCCGCAGCCATGGCTTACCAACTGATGAAAACTGGTACTGGCTTGGAGTGGGTGTTTTGTTGCTTTA TGCGTTAGTTTTCAATATCCTCGTCACACTTGCACTAGCCTTTCTCCATCCTCTTAAAAAGGCTCAAGCTGTCACTCCTTCTGATGCTGCAGAAAAAATG AACATCAAAGGGAACAAGAAGTGTGTATCAAATGAGTCAAATGTACAAGAGAGTAAAAAGAAAGGAATGATTCTTCCATTTCAGCCCCTAGTAATGACTT TCCACAACGTAAACTACTTTGTTGATATGCCCAAGGCAATGCGTCAACAAGGTATGACCGAGACACGGTTGCAGCTTTTGTCAAATGTGAATGGAGTGTT CTCACCTGGGGTTCTAACCGCATTAGTTGGTTCAAGCGGGGCTGGGAAAACTACTTTGATGGATGTGCTTGCTGGCAGGAAAACTGGGGGATATATAACC GGGGATATAATGATATCTGGACATCCTAAAGTGCAGAGCACATTTGCCAGGATTTCAGGATATGTTGAGCAATTTGATATACATTCTCCCCAGGTCACAG TTGAGGAATCTCTATGGTTTTCTTCTAGTCTTCGTCTACCTAAAGAAGTCTCCAAAGAGCAGAGAAAAGAGTTTGTAGAAGAAGTAATGAGACTGGTAGA ACTTGATGCATTAAGACAAGCTTTGGTTGGTTTACCAGGTAGTTCTGGTTTGTCAACAGAACAACGGAAACGCTTAACAATCGCCGTGGAACTTGTTGCA AATCCTTCCATTATTTTCATGGATGAGCCTACATCTGGACTTGATGCGAGAGCTGCAGCCATAGTGATGCGAACTGTTCGTAATACTGTGGATACTGGAC GGACAGTGGTTTGCACCATTCATCAACCAAGTATTGACATTTTCGAAGCTTTTGACGAGCTACTTCTCATGAAACGAGGAGGTCGTGTTATATATGGTGG AAAGCTTGGTCTCCATTCAAAAACTTTGATAGACTACTTTCAGGGAATCAGAGGTGTCTCTCCAATTCCTGAAGGTCATAATCCTGCAACCTGGATGCTT GAGGTTACTACTGCTAGTGCCGAAGAGACAATAGACGCAGACTTTGCTGAGTTATATGCAACATCTCAGCAGTACAGGGAGGTAGAAGCTTCAATTATGC GTTTGAGCGAACCTCCTCCTAGCTCCACACCAGTAAAGTTCTGCACCACATATGCAAAAGATTCATTGTCCCAGTTTCTTATTTGCTTCAAGAAACAGTC TCTTGTATATTGGAGAAGTCCACGATACAACGCAGTGAGGTTGTTCTACACTACGATAGCCGCTATAATATTGGGCACGCAATTCTGGGGCATTGGTACT AAAAGAGACACAACTCAAGGTTTGTTTACTGTAATGGGAGCATTGTATGCTTCATGTATATTCCTCGGTGTTAGCAACGCTTCTTCAGTGCAGCCAATAG TTTCAATCGAGCGAACAGTATTCTACCGAGAGAAGGCAGCAGGAATGTACTCGCCATTAGCTTACGCAGCAGCACAGGGTATTGTGGAGATCCCGTACAT TTTCGCTCAGACAATCCTGTACTCTTTCATAACATACTTCATGATTGGTTTTGACCAAAATACTGGAAAGTTCATTCTGTACATGTTGTTCATGTTCCTA ACATTCACCTACTTCACATTCTATGGCATGATGGCCGTAGGGCTCACCCCTACTCAGAACTTGGCTGCGGTGGTCTCATCTGCATTCTACTCGCTCTGGA ACCTCCTATCCGGGTTTCTAATCCCGAAACAGTTCATTCCCGTGTGGTGGATGTGGTTTTACTACATCTGCCCTATAGCATGGACCCTGCAGGGCATCAT CTCGTCTCAGCTTGGAGACGTCGAAACCATGATTCAAGGCCAAGGGTTCCGGATATCGGTTAAGGATTATCTGAAACAAAATTATGGGTACGGGACGGAC AAGATTGGACCTTCGATTGCGGTGCTGCTATGCTTCAATATCCTCTTCTTCTCTGCATTTGCTGTTTCTGTGAAAATGATCAACTTCCAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10018230 pacid=23179274 polypeptide=Lus10018230 locus=Lus10018230.g ID=Lus10018230.BGIv1.0 annot-version=v1.0 MAASDGSEFFELEIDPVRDSFARQSNAESSRDDEDELIWEAIARLPTQKRDRFAVLRRSPSERELLHGQHQEQFTETIDVRKLDRAGRELVVNKALATNS QDNYKLLSAIKKRLDRVGIQVSNVEVRFDNLNIVANVQIGSRALPTLINAARDTIEDLFTSLRLYRPNRYPLTILDEVNGILKPGRMTLLLGPPGSGKST LLKALAGKLDENLKVTGSVTYNGQNLNKFHVQRTSAYISQTDNHIAELTVRETLDFAARWQGASEDFAGNMKHLVQLEKEKNIRPSPEIDAFMKASSVRG KKHNISTDYILKVLGLDVCSETLVGSDMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTYQIVKCIGNFVHLMEGTVLMALLQPPPETFDLF DDLILLSEGYVVYEGPRAEVVRFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKSYVFISAQEIARAFKDSGFGRSLSSSVNVPYDKAKDHPEAL AKTKYAAPRWELLKTCFAREMLLITRHRFLYIFKTCQVAFVGFVTCTIFNRSRLHPGSEIEGNLYLSCLFFGLVHMLFNGFSELSLLMFRLPVFYKQRDN RFHPAWAWSLASFMLRVPYSILEAIIWSLIVYYSVGFSPEMWRFFRFMFLLFSVHQMALGVFRLVAAVARDMVIANTFASACLLITFLSGGFIIPKDMIK SWWAWAFWLSPLTYAQRAISVNEFAADRWMKKSATGNDTIGYNILRSHGLPTDENWYWLGVGVLLLYALVFNILVTLALAFLHPLKKAQAVTPSDAAEKM NIKGNKKCVSNESNVQESKKKGMILPFQPLVMTFHNVNYFVDMPKAMRQQGMTETRLQLLSNVNGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIT GDIMISGHPKVQSTFARISGYVEQFDIHSPQVTVEESLWFSSSLRLPKEVSKEQRKEFVEEVMRLVELDALRQALVGLPGSSGLSTEQRKRLTIAVELVA NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGLHSKTLIDYFQGIRGVSPIPEGHNPATWML EVTTASAEETIDADFAELYATSQQYREVEASIMRLSEPPPSSTPVKFCTTYAKDSLSQFLICFKKQSLVYWRSPRYNAVRLFYTTIAAIILGTQFWGIGT KRDTTQGLFTVMGALYASCIFLGVSNASSVQPIVSIERTVFYREKAAGMYSPLAYAAAQGIVEIPYIFAQTILYSFITYFMIGFDQNTGKFILYMLFMFL TFTYFTFYGMMAVGLTPTQNLAAVVSSAFYSLWNLLSGFLIPKQFIPVWWMWFYYICPIAWTLQGIISSQLGDVETMIQGQGFRISVKDYLKQNYGYGTD KIGPSIAVLLCFNILFFSAFAVSVKMINFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	0	1
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	1.0	0.9281
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	1.4	0.9260
					Lus10003629 [exp]	4.6	0.8888
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	5.3	0.8914
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	6.1	0.8202
					Lus10006254 [exp]	6.9	0.9181
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	7.3	0.8895
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	7.4	0.8912
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	9.2	0.8415
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	9.6	0.8296

Compare expression of checked genes

Lus10018230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.