Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 266 / 4e-85 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 258 / 1e-81 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 219 / 4e-67 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 187 / 8e-55 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 186 / 2e-54 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 174 / 1e-49 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040674 [exp] 358 / 4e-121 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10027791 [exp] 251 / 3e-79 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 250 / 1e-78 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 246 / 2e-77 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 245 / 1e-76 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10034853 [exp] 180 / 2e-50 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 178 / 2e-50 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 175 / 1e-49 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10006068 [exp] 164 / 5e-44 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251200 [exp] 317 / 1e-104 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 315 / 4e-104 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.016G115500 [exp] 266 / 3e-85 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 262 / 2e-83 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.011G166900 [exp] 186 / 3e-54 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.001G469800 [exp] 181 / 2e-52 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 177 / 3e-51 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10018231 pacid=23179334 polypeptide=Lus10018231 locus=Lus10018231.g ID=Lus10018231.BGIv1.0 annot-version=v1.0 ATGCAGAGCTCAAGTGTTGACCTTGAGGTCTCGATCCTCCTCGATTCTCCGGACAACGAAATCTTTCTTCAGCTCGACGCCGGCGGAAGTCGGAGTAATG TTATTAGTAACGGTAACCGTAACGGTAACGGTAACGGCTTGATCAAATCGTCATCGCCGGCCGAATGTAGTAACAGAAAGATCCAGAAGGGGAAGGGATT CCTGACGAATCTGAAGCAAGTGATTCTCGGCACCAAGCTGGCAGTCCTCTTCCCGGCCGTTCCGATCGCCATCCTCGCCGATCTTTACGGATTCGGACGG CCATGGGTATTCGGTTGTAGCTTGCTTGGACTGGCCCCACTCGCTGAACGTGTCAGCTTCCTCACTGATTGGGGGGCTGCTGAATGCAACTTGCGGAATA ATGAACAGAAGCAGGCTGATGTGAACTCGCTACTGCTATTACTGGGCTTGTTGTGCCACATACTGCCACTAATGTTCAAGTATGCAATCGGACAAGGTCC AGTTGCTTCCTCCTCTACTCTTCAGCTGTCAAGAGTCAGTAGCATTTTCATGCTTGTGGCATACGCTGGATACATCATCTTTCAGCTGAAAACTCACAGG CAGCTCTTTGAGTCCCAGCAACAGGTTGAGGAAGATGGGGAATTGGATGAGGAAGAAGAAAATGGGGCAGTGATTGGATTCTGGAGTGCCTTCATTTGGT TGGTTGGCATGACGGTTTTCATAGCCTTGTTATCCGAATATGTTGTGGGCACAATTGAGTCTGCTTCAGATTCTTGGGGGATTTCTATAAGCTTCATCAG CATAATTTTACTGCCCATTGTTGGGAATGCAGCAGAACATGCTGGATCCATCATATTTGCTTTCAAGAACAAACTGGACATATCCCTGGGAGTTGCACTG GGATCAGCCACTCAAATTTCAATGTTTGTGGTACCTTTTTGTGTATTAGTTGCATGGATTATGCACGTGGATATGGACCTGGATTTCAGCCTTCTTGAGA CTGGCTGTCTGGCTTTCAGTATTATCATCACAGCTTTCACGTTACAGGATGGGACCTCGCACTACATGAAAGGAGTAATTCTTGTACTGTGCTACGTTGT TATCGCTGCATGCTTTTTCGTTTACAAAGTTCCGCAAGATCAAATGAACATGTACACGGGGATCAAACCCTTTACCGGATTGTTCGCCTTCCTAGCTAGC TAA
AA sequence Show only first row Show all	>Lus10018231 pacid=23179334 polypeptide=Lus10018231 locus=Lus10018231.g ID=Lus10018231.BGIv1.0 annot-version=v1.0 MQSSSVDLEVSILLDSPDNEIFLQLDAGGSRSNVISNGNRNGNGNGLIKSSSPAECSNRKIQKGKGFLTNLKQVILGTKLAVLFPAVPIAILADLYGFGR PWVFGCSLLGLAPLAERVSFLTDWGAAECNLRNNEQKQADVNSLLLLLGLLCHILPLMFKYAIGQGPVASSSTLQLSRVSSIFMLVAYAGYIIFQLKTHR QLFESQQQVEEDGELDEEEENGAVIGFWSAFIWLVGMTVFIALLSEYVVGTIESASDSWGISISFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAL GSATQISMFVVPFCVLVAWIMHVDMDLDFSLLETGCLAFSIIITAFTLQDGTSHYMKGVILVLCYVVIAACFFVYKVPQDQMNMYTGIKPFTGLFAFLAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	0	1
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	2.0	0.9650
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10040674 [exp]	3.2	0.9402
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	4.9	0.9532
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	5.3	0.9559
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	8.1	0.9391
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	8.9	0.9510
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	9.2	0.9504
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	9.3	0.9279
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	10.0	0.9304
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	10.4	0.9465

Compare expression of checked genes

Lus10018231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.