Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58730 389 / 2e-134 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 44 / 0.0001 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 43 / 0.0002 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 41 / 0.0004 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040669 [exp] 747 / 0 AT5G58730 392 / 8e-136 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 43 / 0.0003 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 43 / 0.0004 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046200 [exp] 494 / 1e-175 AT5G58730 432 / 6e-152 pfkB-like carbohydrate kinase family protein (.1) Potri.001G251500 [exp] 493 / 4e-175 AT5G58730 433 / 3e-152 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 50 / 2e-06 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 43 / 0.0003 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 42 / 0.0008 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 42 / 0.0008 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10018235 pacid=23179395 polypeptide=Lus10018235 locus=Lus10018235.g ID=Lus10018235.BGIv1.0 annot-version=v1.0 ATGGTCACCTCTCCCTGCCCTCCCTCCTCCGGCGACGTCCTGATCGTCGGAAACTACTGCCACGACGTCCTGATCCAAGACTCCGCCGTCAAGGCGGAAT CCCTCGGCGGCGCCGCCTCCTTCATCTCCAACGTCTTCAATGGAATGTCAATCCCTTGCACCTTGGTCTCCAAGGTAGGTAACGATTTTCGATACCCCGT AAGCCACCCTCCGATCGTGTCCCCGGACGCCAAAACCACCGTCTTCCACGCTTACTTCGACTCCGGCGGTCAACCGGGCGGCACCAACAACCGACCCGAC CGAATCCTCAAGAGAATCTGCGCGTGCGACGCGATCAACCCTACCGATCTCCCTAATTCGAGATTCGCGTTCGGGATGGCGATCGGCGTCGGCGGGGAAT TGCTTCCGGAAACCCTAGAGAAGATGATCGAGATTTGCGATCTGGTGTTCGTCGATGTCCAGGCCTTAATTAGGGATTTCGACCTTGCGGGTGGGACGGT GAGGCTTGTGAAACTGCGAGAAACTGGGTTTTATAGGCTGCTGCCGCGGATCGGGGTTCTGAAGGCTTCGTCGGAGGAGGCGGCATATGTGGACGTCGAG GAAGTGAGGAAATGGTGCTGCGTGGTGGTAACGAACGGGAAAGAAGGGTGTGGACTGTATTGGAGAGACGGGAATAGCAAAGTGTCGCCATTTTTCGCGA GCCAGAGAGATCCGACGGGTGCAGGGGATAGTTATTTGGGTGGGTTTGTGGCTGGGTTGGTTCAAGGATTGGCTGTTCCTGATGCTGCTTTGTTGGGGAA CTTCTTTGGTGCGCTTACAGTTGAACAAATTGGATTGCCCAAGTTTTCTCCTTGGGTGTTGCAGAGGGTGAAGGAAGAGGTGCAGAAACGGAGGATGCAA CACCAAGAAGGACGAATCATCAAGGAGCTGGATTTCTTCAAACCAGTAGGGCATGAACAATTCCAGGCCTCCCTTTGTGGTTCAAGAACTGTCCTCCAGT GTTCAGTTCAAGAATGTCATTGGCATCCACCAGGTTCCTACGCAGCAATGGAGCAAGACATCCAGCTGCTCAAAGGTACAGGGGCGGCGCAACCTAAGTT ATTAGTCAACGATCTGTGTGAGAAAGTCTCGAATTCAGATTCGTCGTCGATGGATGGTTGA
AA sequence Show only first row Show all	>Lus10018235 pacid=23179395 polypeptide=Lus10018235 locus=Lus10018235.g ID=Lus10018235.BGIv1.0 annot-version=v1.0 MVTSPCPPSSGDVLIVGNYCHDVLIQDSAVKAESLGGAASFISNVFNGMSIPCTLVSKVGNDFRYPVSHPPIVSPDAKTTVFHAYFDSGGQPGGTNNRPD RILKRICACDAINPTDLPNSRFAFGMAIGVGGELLPETLEKMIEICDLVFVDVQALIRDFDLAGGTVRLVKLRETGFYRLLPRIGVLKASSEEAAYVDVE EVRKWCCVVVTNGKEGCGLYWRDGNSKVSPFFASQRDPTGAGDSYLGGFVAGLVQGLAVPDAALLGNFFGALTVEQIGLPKFSPWVLQRVKEEVQKRRMQ HQEGRIIKELDFFKPVGHEQFQASLCGSRTVLQCSVQECHWHPPGSYAAMEQDIQLLKGTGAAQPKLLVNDLCEKVSNSDSSSMDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	1.0	0.9481
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	2.0	0.9171
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	3.2	0.9231
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	3.5	0.9179
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	3.9	0.9159
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	6.5	0.9001
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	7.1	0.8940
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	8.8	0.9028
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	9.8	0.9079
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	10.4	0.8818

Compare expression of checked genes

Lus10018235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.