Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58720 380 / 1e-126 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) AT3G15390 93 / 5e-20 SDE5 silencing defective 5 (.1.2) AT2G26280 52 / 8e-07 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040668 [exp] 782 / 0 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10018188 [exp] 97 / 3e-21 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10025646 [exp] 67 / 2e-11 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046300 [exp] 520 / 0 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Potri.001G401900 [exp] 119 / 2e-28 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.011G051300 [exp] 102 / 6e-23 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.004G042100 [exp] 62 / 5e-10 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.006G218900 [exp] 51 / 2e-06 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.018G047700 [exp] 51 / 2e-06 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771) PF01713 [flax] [poplar] Smr Smr domain
Representative CDS sequence Show only first row Show all	>Lus10018236 pacid=23179302 polypeptide=Lus10018236 locus=Lus10018236.g ID=Lus10018236.BGIv1.0 annot-version=v1.0 ATGAAGGCGCAGACCAAGAGGAAGAAGAGGCGTCCCTCACGCGCCGCCTCCTCTACCCCCACCAAAGCTCAGCCGAGCCCTCATGCCCGGCAGCCGCCGG AGGAGCAGGAGGAGGATGAACGCAAGGTTTTCCTCGCGCTGATGGAGGCGTTTGACTCGATTTCGATAGAGGACGCTTCTGCCGCCTACAAGGAGGCGAA CGGTGACGTCGACAAGGCTGCCGACATTTTAGCCAGCTTGACCGACGATCCTTCGACGAGCTCCGTGTCCAGCGGGGTTTCTGGCTTCGATTCCGGCTCT GGATCCGGGAGCTCTAGCGGTTCTGCTTCCAGTTCGGGATCTTCCGAAGGGTTTATGGAAGGTCGTTTGGTTGGCGGGCAGGGGTTTCGAGGGAGTCATC ATAAGCAGAAAAGAGTGGTGGCTGTGACTGGTACGGTTTCTACTATGTTGGGGAAGGAGTATGTGAAGGCTAGCCAGAGGAGGGATTCCTCGAAGACGAA GGAGCTGTTCCAGTTTGGAAATGGCGCCTCTCAGAGGGATGAGGCTGAGCAGTTTCTGTGTTCCATGCTTGGTGATGAGTGCGAGTTGAATCTGGCTGTT GTTAGAGACGTTCTTTGTCAATGTGGTTACAACGTTGAGAAGGCTATGGATGCCTTGCTTGATTTATCCGGTTCCTCCTCAGAGCAAAGCCGTAACTACA ATTTCTCCGCTGAAAATGGAAATCAGAAGGGACATGTGGAGTATGCTGACAATTTGACAGACAAGGCTTCTGATAGCACTTCATATTCATCTGAAAGTGA TCAATATGAGAGTGTGTGGGATTATGGATACAGGAATTACGCTCAAGTCCTCACTGATTCTCAAGCTCCTTTCCGAACTAGTCCAAGAACTAGCAAATCA GATATCCCTCAGAAAGTGCTGGATTCTTTGTATAGCATTACGAAGAGTTCCACTCATGAACCGCATTCTATGAATTGGAAGAATATAGTAAAGAAAATGC AATCACTTGGCCCCGCTGATGTTTCACCAAGCAGTGAGGTGTCTCAACAAGACATCAATACTAAAGGCAATGAGTACCACATCTTGAGAGAGTCTGCAAA ACAACACTGGGATTCCATGAGATCCTACTATCACAGGGCTGCTACAGCTTATTCGAAGGGGGAAAAGCAGTATGCAACTTATCTGTCCGATCAGGGGAAA TCGCAGACAAAATTGGCTCAAGAAGCTGACAAGAAGGCTAGCATGGATATCTTCAAGGCTAGGAACACGGAGATAAAGAATATGATAACAATTGATTTGC ATGGTCAACATGTGAAACAAGCTATGAAGGTTTTGAAGCTTCACCTTCTGTTTGGATCTTACGTTAACTCAATTCAAGTCCTCAGAGTAATTACAGGATG TGGGAGTCATGGTTTCGGAAAGTCGAAGCTAAAACAATCGGTGGTTCAACTGTTGGAAAGCGAAGAAATGGAGTTTAGTGAAGAGAACCAAGGGACTCTT CTAATCAAGATTGACGGAAGCAAAGAGTACAGCTTTATGGATTCTGATAGTGATTATGAGAGTAACTGA
AA sequence Show only first row Show all	>Lus10018236 pacid=23179302 polypeptide=Lus10018236 locus=Lus10018236.g ID=Lus10018236.BGIv1.0 annot-version=v1.0 MKAQTKRKKRRPSRAASSTPTKAQPSPHARQPPEEQEEDERKVFLALMEAFDSISIEDASAAYKEANGDVDKAADILASLTDDPSTSSVSSGVSGFDSGS GSGSSSGSASSSGSSEGFMEGRLVGGQGFRGSHHKQKRVVAVTGTVSTMLGKEYVKASQRRDSSKTKELFQFGNGASQRDEAEQFLCSMLGDECELNLAV VRDVLCQCGYNVEKAMDALLDLSGSSSEQSRNYNFSAENGNQKGHVEYADNLTDKASDSTSYSSESDQYESVWDYGYRNYAQVLTDSQAPFRTSPRTSKS DIPQKVLDSLYSITKSSTHEPHSMNWKNIVKKMQSLGPADVSPSSEVSQQDINTKGNEYHILRESAKQHWDSMRSYYHRAATAYSKGEKQYATYLSDQGK SQTKLAQEADKKASMDIFKARNTEIKNMITIDLHGQHVKQAMKVLKLHLLFGSYVNSIQVLRVITGCGSHGFGKSKLKQSVVQLLESEEMEFSEENQGTL LIKIDGSKEYSFMDSDSDYESN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58720			smr (Small MutS Related) domai...		Lus10018236 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	10.7	0.8294
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	11.4	0.8705
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	14.1	0.8530
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	14.7	0.8636
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	15.7	0.8526
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10005036 [exp]	17.6	0.7901
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	19.2	0.8266
AT5G04250			Cysteine proteinases superfami...		Lus10038708 [exp]	23.4	0.8460
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	23.5	0.8448
AT1G23230			unknown protein		Lus10035997 [exp]	28.8	0.8316

Compare expression of checked genes

Lus10018236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.