Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58710 321 / 6e-113 ROC7 rotamase CYP 7 (.1) AT2G29960 317 / 1e-111 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 268 / 5e-92 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 229 / 2e-77 ROC1 rotamase CYP 1 (.1) AT2G21130 228 / 8e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 221 / 6e-74 ROC3 rotamase CYP 3 (.1.2) AT4G34960 217 / 7e-72 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 214 / 4e-71 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 206 / 3e-68 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT5G13120 207 / 3e-67 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040666 [exp] 355 / 2e-126 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10038315 [exp] 294 / 7e-102 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10014846 [exp] 284 / 3e-97 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 278 / 2e-95 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10030408 [exp] 266 / 7e-90 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007579 [exp] 228 / 1e-76 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 223 / 7e-75 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 223 / 9e-75 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 220 / 2e-73 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046500 [exp] 330 / 1e-116 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 321 / 3e-113 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 294 / 6e-102 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G130100 [exp] 226 / 5e-76 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G173500 [exp] 224 / 9e-75 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 223 / 1e-74 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G132800 [exp] 222 / 8e-74 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 220 / 8e-74 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 220 / 1e-73 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 216 / 6e-72 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10018238 pacid=23179308 polypeptide=Lus10018238 locus=Lus10018238.g ID=Lus10018238.BGIv1.0 annot-version=v1.0 ATGAACTCGAAATCTTTGGCCGTCGCTCTGTTATGGAGCGCTCTACTTTTCGGAACCGTAGCGCTCATCCAGGCGAAGAAATCGGACGAGAAGTTGAAAG AGATCACTCACAAAGTTTATTTCGATGTAGAGATCGACGGCAAGCCTGCCGGTCGTATTACCATGGGACTCTATGGCAAGGCAGTTCCCAAGACAGCAGA GAATTTCAGAGCATTGTGCACAGGTGAAAAGGGAGTTGGAAAGAGCGGGAAGCCACTTCACTACAAGGGAAGCTCATTCCACAGGATCATTCCTAGCTTT ATGCTCCAAGGAGGTGACTTCACTCATGGTGATGGAAGAGGAGGGGAGTCAATCTACGGGGAGAAGTTTGCTGACGAGAACTTCAAGTTGAAGCACACTG GCCCTGGACTTCTGTCAATGGCGAATGCCGGTAAAGACACTAATGGTTCACAGTTCTTCATTACAACTGTTACAACTAGCTGGCTGGACGGCAGGCACGT CGTATTCGGGAAGGTGCTATCTGGAATGGATGTTGTGTACAAAGTTGAAGCCGAAGGCAAGCAAAGTGGGACACCGAAGAGCAAGGTCGTCATTGTTGAC AGCGGCGAACTACCTCTATAA
AA sequence Show only first row Show all	>Lus10018238 pacid=23179308 polypeptide=Lus10018238 locus=Lus10018238.g ID=Lus10018238.BGIv1.0 annot-version=v1.0 MNSKSLAVALLWSALLFGTVALIQAKKSDEKLKEITHKVYFDVEIDGKPAGRITMGLYGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSF MLQGGDFTHGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGKQSGTPKSKVVIVD SGELPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10018238 [exp]	0	1
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	1.4	0.8905
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	2.8	0.8633
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	4.5	0.8670
AT2G31410			unknown protein		Lus10035165 [exp]	4.6	0.8639
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	4.9	0.8733
AT5G03460			unknown protein		Lus10014419 [exp]	5.8	0.8872
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	6.0	0.8713
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	12.0	0.8453
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	14.3	0.8572
AT1G07080			Thioredoxin superfamily protei...		Lus10026384 [exp]	15.3	0.8595

Compare expression of checked genes

Lus10018238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.