Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07220 639 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT5G23850 393 / 6e-132 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 381 / 2e-127 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 360 / 1e-118 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 344 / 5e-113 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 342 / 9e-113 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 338 / 8e-111 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT2G45840 330 / 1e-107 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 318 / 1e-103 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040665 [exp] 894 / 0 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039228 [exp] 378 / 3e-126 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 357 / 5e-118 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 336 / 4e-111 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 312 / 4e-101 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 309 / 2e-99 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 233 / 3e-72 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 236 / 5e-70 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 204 / 5e-60 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252000 [exp] 668 / 0 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 379 / 5e-127 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 376 / 1e-125 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 361 / 8e-120 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157800 [exp] 341 / 2e-112 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157900 [exp] 335 / 2e-110 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 47 / 1e-06 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10018239 pacid=23179299 polypeptide=Lus10018239 locus=Lus10018239.g ID=Lus10018239.BGIv1.0 annot-version=v1.0 ATGGCGGCTCCTCCGAGGCTCTCCCCTCCTCGCACGCCGTCCTACCTCCTCCCTTCCCTCCTCGCTTTAGCCCTCTTCACCTTCTTCTTCCTCTATAAGG TGGACGACTTCGCGACGAACACCAAAACAATCGCCGGACACAACCTGGAGCCGACACCATGGCACGTCTTCCCGGCTAAAAACTTCGACGACGAAACCCG CCACACCCGAGCTTACAAGATCATCCAATGCTCTTACCTCAGCTGTCCTTATTTCAACAAGACGATTACAGAGCCTCCTCGCTTTTCTTCCTCTTCCAAA CCGGCTGCTCAGTGTCCTGAATTCTTCAGCTACATCCACCGCGATCTGGAGCCGTGGGCTAAGTCCGGGATCACCGAGGACCAGCTAATGGAGGCGAAGA ACTTCGCTGCGTTCAGGATCGTTATCTACCAAGGGAAGCTCTACTTCGACCCTTACTACGCTTGCTTCCAGAGCCGTATGATGACGACGATCTGGGGTTT CGTGCAGCTTTTGAAGAAGTATCCTGGCATGGTTCCTGATGTTGATCTGATGTTTGATTGTATGGATAAGCCGATCTTCAACCGGACTGAGCATCAGTCG AATCCTGTGCCGTTGTTTCGGTATTGCACCACCCGTGAGCATTTCGACATTCCTTTCCCTGATTGGTCCTTCTGGGGATGGTCAGAGATCAATATCAGGT CGTGGAGTGAGGAGTTTCCTGACATAAAGAAAGGCTCTCAGGCTAAAAGATGGGCAAAAAGGCAGCCGCATGCATTCTGGAAGGGGAATCCGGATGTTGT TTCTCCTGTTCGTTTGGAGTTGCTGCAGTGTAATGACTCCAGGAAATTTGGAGCACAGATTATGAGACAGGATTGGGTACAAGAGGCCAAAGAAGGTTTT GAGGCTTCCAAGCTATCCAATCAGTGCAACTATCGGTACAAAATATATGCAGAAGGCTTTGCTTGGTCAGTGAGCTTGAAGTATATCATGTCATGCGGCT CCCTTACCTTCATAATTACACCACAGTATGAGGATTTCTTCAGCCGTGGTCTGATTCCCAAGAAGAATTATTGGCCAGTATCTCCCTTTGAGTTGTGTAA ATCTATAAAGTCAGCTGTTGACTGGGGAAATTCGCACCCGGCTGAGGCTCAGGCAATAGCAAAAGCAGGACAGGACTACATGGAAAGCATAAGCATGGAC AGAATCTACGACTACATGTTCCACCTCATATCGGAATATTCGAAGCTGCAGAAGTTCAAGCCCGTCCCACCGACCACCGCTCTCGAGGTGTGTTCAGATT CCGTGCTGTGCTTTGCAGACGAGAAACAGAGGATGTTCCTCGAGAAGTCAACGACTTCTCCCTCGTCGGAGCCTCCTTGCAGTCTCCCGACTGCTGGAGA CAGCAACATCCAACGTTGGCTGGACGAGAAGCAGAGATTACAGGAGGAAGTGAGACAAATGCAGCCGCAGCCACAGCCGCCTCAACCATGA
AA sequence Show only first row Show all	>Lus10018239 pacid=23179299 polypeptide=Lus10018239 locus=Lus10018239.g ID=Lus10018239.BGIv1.0 annot-version=v1.0 MAAPPRLSPPRTPSYLLPSLLALALFTFFFLYKVDDFATNTKTIAGHNLEPTPWHVFPAKNFDDETRHTRAYKIIQCSYLSCPYFNKTITEPPRFSSSSK PAAQCPEFFSYIHRDLEPWAKSGITEDQLMEAKNFAAFRIVIYQGKLYFDPYYACFQSRMMTTIWGFVQLLKKYPGMVPDVDLMFDCMDKPIFNRTEHQS NPVPLFRYCTTREHFDIPFPDWSFWGWSEINIRSWSEEFPDIKKGSQAKRWAKRQPHAFWKGNPDVVSPVRLELLQCNDSRKFGAQIMRQDWVQEAKEGF EASKLSNQCNYRYKIYAEGFAWSVSLKYIMSCGSLTFIITPQYEDFFSRGLIPKKNYWPVSPFELCKSIKSAVDWGNSHPAEAQAIAKAGQDYMESISMD RIYDYMFHLISEYSKLQKFKPVPPTTALEVCSDSVLCFADEKQRMFLEKSTTSPSSEPPCSLPTAGDSNIQRWLDEKQRLQEEVRQMQPQPQPPQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	0	1
AT5G48500			unknown protein		Lus10009584 [exp]	1.7	0.8909
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	2.6	0.8977
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	2.8	0.8918
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	4.2	0.8751
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	5.7	0.8774
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	6.0	0.8859
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	8.2	0.8907
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	10.1	0.8632
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	11.9	0.8327
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	14.1	0.8736

Compare expression of checked genes

Lus10018239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.