Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58690 444 / 4e-151 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58700 437 / 2e-148 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT2G40116 422 / 3e-142 Phosphoinositide-specific phospholipase C family protein (.1) AT3G55940 419 / 3e-141 Phosphoinositide-specific phospholipase C family protein (.1) AT3G08510 416 / 7e-141 ATPLC2 phospholipase C 2 (.1.2.3) AT5G58670 333 / 2e-108 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 319 / 9e-103 ATPLC1 phospholipase C1 (.1) AT3G47290 199 / 2e-57 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 192 / 1e-54 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040664 [exp] 754 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018241 [exp] 461 / 2e-159 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 459 / 1e-156 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10028287 [exp] 456 / 2e-155 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10014845 [exp] 453 / 2e-154 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 442 / 5e-150 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 432 / 4e-146 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10036182 [exp] 391 / 1e-130 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 381 / 2e-126 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252100 [exp] 557 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.010G188900 [exp] 458 / 2e-156 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.010G188800 [exp] 453 / 8e-155 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068400 [exp] 448 / 9e-153 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252300 [exp] 401 / 2e-134 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 343 / 7e-112 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068300 [exp] 270 / 3e-83 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252104 [exp] 40 / 0.0003 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10018240 pacid=23179390 polypeptide=Lus10018240 locus=Lus10018240.g ID=Lus10018240.BGIv1.0 annot-version=v1.0 ATGGGGAGCTACAGAATGTGCGGCTGCTTCGTCAGGAAGTTCAGAGTCTCCGAGGCCGGACCTCCACCGGACGTTAGGGACGCTTTTAGAAAGTACACCG ACGGCACTCTTTTGATGACCGTCGATCAGCTCCGCCTCTTCCTATCCGAAGTCCAGGGCGACGCCGACTGCATTTCCGACGCCGCCGAGAAGATCGTCGC GTCGATTCTTCACAAGCGGCATCATCTCGTCGGCAGGTTTGGTAGAAATTGTCTTACCGCCGACGATTTCTATCGTTATTTGTTCTCCGCCGATCTCAAC CCCGCAACTTCTCCGCCGATCTCAATCCCGCAACCGTCGCCGATCAGTGATTGCAGCGATGTTCCAATCATCAAGGCATTGAAGAAAGGGGTGAGAGTGA TTGAGCTTGACCTCTGGCCGAATTCGGATAGAGACGAAATCCACGTTCTACATGGAAGGACATTGACTACTCCTGTGGAAGTTCTAAGGTGTTTGAGGTC CATAAAGGAGTATGCGTTCGAAGCTTCTCCATATCCAGTAATAATCACCCTAGAAGATCACCTAACCACAGGACTTCAAGCTAAAGTTGCTCAGATGATC AAAGATACGTTTGGGGATATGCTGTACTGTCCTGAAGCTGAGTGTTTGGAAGAGTTCCCTTCACCGGAAGATTTGAAGTATCGGGTAATTATTTCAACCA AGCCTCCCATGGAATACCTCAAGTCTAAGAGTTCAAGGAGAAAGCGGAGTAAATCACAGAAGGAAAAGGACTCCGAGGATGATACGTGGGGGAAGGAAGT ATCTGTTGTCTCAACCGATCGCGATGATAGTGGTTTGCTTTCTATCAAGAGTAGTAGTGATTCGAGCGAATATACAGATGATGAGCTAGTCCCACTAGCA GCATCTGACTACAAGCGTGTAATAGCCATCCATGCTGGGAAGCCAAAGGGTGGTTTGAAGCAGGCTCTTAAAGTTGATGAAAACAAAGTTAGACGGCTTA GTTTGAGTGAACAAAAGCTCGAAAAGGCTACCGAGAATCATGGAAAAGAGGTTATTAGATTCACGCAGAAGAATATATTGAGGGTGTTTCCTAAAGGTAC TCGAGTCACGTCTTCTAACTACAAGCCCCTAATTGGTTGGATGCACGGAGCTCAAATGGTTGCCTTCAATATGCAGGGATATGGAAGAGCTCTTTGGTTG ATGCATGGAATGTTCAGGTCCAATGGAGGATGTGGATATGTCAAGAAGCCTGATATTCTGATGAATCCTGATAAATTATTCAACCCCAAATCCCAACTAC CTGTAAAGAAAACATTGAAGTGGAGATGGATGGCACTTGGATTTCAAACAGACGCATTTCGACAAATACTCTCCTCCAGATTTCTACACCAGGGTGGGAA TAGCAGGGGTGCCAGACGACGTGGTAATGAAGAAAACAGAAGTAAAAGAGGACGACTGGACCCCGGTCTGGAACGAAGAGTTCACATTCCCATTGACAGT TCCTGA
AA sequence Show only first row Show all	>Lus10018240 pacid=23179390 polypeptide=Lus10018240 locus=Lus10018240.g ID=Lus10018240.BGIv1.0 annot-version=v1.0 MGSYRMCGCFVRKFRVSEAGPPPDVRDAFRKYTDGTLLMTVDQLRLFLSEVQGDADCISDAAEKIVASILHKRHHLVGRFGRNCLTADDFYRYLFSADLN PATSPPISIPQPSPISDCSDVPIIKALKKGVRVIELDLWPNSDRDEIHVLHGRTLTTPVEVLRCLRSIKEYAFEASPYPVIITLEDHLTTGLQAKVAQMI KDTFGDMLYCPEAECLEEFPSPEDLKYRVIISTKPPMEYLKSKSSRRKRSKSQKEKDSEDDTWGKEVSVVSTDRDDSGLLSIKSSSDSSEYTDDELVPLA ASDYKRVIAIHAGKPKGGLKQALKVDENKVRRLSLSEQKLEKATENHGKEVIRFTQKNILRVFPKGTRVTSSNYKPLIGWMHGAQMVAFNMQGYGRALWL MHGMFRSNGGCGYVKKPDILMNPDKLFNPKSQLPVKKTLKWRWMALGFQTDAFRQILSSRFLHQGGNSRGARRRGNEENRSKRGRLDPGLERRVHIPIDS S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018240 [exp]	0	1
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	13.4	0.8569
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	28.4	0.8252
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	31.0	0.7736
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	51.0	0.8006
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	74.2	0.7797
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	78.9	0.8044
AT2G22530			Alkaline-phosphatase-like fami...		Lus10025722 [exp]	80.4	0.7728
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	84.0	0.7724
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	92.2	0.7521
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	119.1	0.7731

Compare expression of checked genes

Lus10018240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.