Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58700 500 / 5e-175 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT3G08510 498 / 4e-173 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 493 / 7e-171 Phosphoinositide-specific phospholipase C family protein (.1) AT2G40116 492 / 3e-170 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58690 469 / 2e-161 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 409 / 3e-138 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 383 / 3e-128 ATPLC1 phospholipase C1 (.1) AT3G47290 292 / 4e-93 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 291 / 9e-93 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1) AT2G21010 45 / 7e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040664 [exp] 722 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10014845 [exp] 531 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10028287 [exp] 527 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 525 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 522 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10009894 [exp] 497 / 4e-172 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10036182 [exp] 422 / 3e-143 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 405 / 2e-136 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018240 [exp] 461 / 5e-34 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252100 [exp] 585 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.008G068400 [exp] 525 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188800 [exp] 522 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068300 [exp] 507 / 5e-176 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.010G188900 [exp] 504 / 4e-175 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252300 [exp] 471 / 2e-162 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 405 / 2e-136 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 88 / 2e-21 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3) Potri.004G174600 [exp] 45 / 0.0001 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 44 / 0.0002 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10018241 pacid=23179333 polypeptide=Lus10018241 locus=Lus10018241.g ID=Lus10018241.BGIv1.0 annot-version=v1.0 ATGCCCGTCGACCAGCCCCGCCTCTTCCTATCCGAAGTCCAGGGCGACGCCGACTGCATTTCCGACGCCGCCGAGAAGATCGTCGCGTCGATTCTTCACA AGCGGCATCATCTCGTCGGCAGGTTTGGTAGAAATTGTCTTACCGCCGACGATTTCTATCGTTATTTGTTCTCCGCCGATCTCAACCCCGCAACCGTCGC CGATCAGGAGTATGCGTTCGAAGCTTCTCCGTATCCAGTAATAATTACCCTAGAAGATCACCTCACCACAGGACTTCAAGCTAAAGTTGCTCAGATGATC AAAGATACGTTTGGGGATATGCTGTACTGTCCTGAAGCTGAGTGTTTGGAAGAGTTCCCTTCACCGGAAGATTTGAAGTATCGGGTAATTATTTCAACCA AGCCTCCCATGGAATACCTCAAGTCTAAGAGTTCAAGGAGAAAGCGGAGTAAATCACAGAAGGAAAAGGACTCCGAGGATGATACGTGGGGGAAGGAAGT ATCTGTTGTCTCAACCGATCGCGATGATAGTGGTTTGCTTTCTATCAAGAGTAGTAGTGACTCGAGCGAATATACAGATGATGAGCTAGTCCCACTAGCA TCATCTGACTACAAGCGTGTAATAGCCATCCATGCTGGGAAGCCAAAGGGTGGTTTGAAGCAGGCTCTTAAAGTTGATGAAAACAAAGTTAGACGGCTTA GTTTGAGTGAACAAAAGCTCGAAAAGGCTACCGAGAATCATGGAAAAGAGGTTATTAGATTCACGCAGAAGAATATATTGAGGGTGTTTCCTAAAGGTAC TCGAGTCACGTCTTCTAACTACAAGCCATTAGTTGGTTGGATGCACGGAGCTCAAATGGTTGCCTTCAATATGCAGGGATATGGAAGAGCTCTTTGGTTG ATGCATGGAATGTTCAGGTCCAATGGAGGATGTGGATATGTGAAGAAGCCTGATATTCTGATGAATCCTGATAAATTATTCAACCCCAAATCCCAACTAC CCGTAAAGAAAACATTAAAGGTTAAAGTCTACAGTGGAGATGGATGGCACTTGGATTTCAAACAGACGCATTTCGACAAATACTCTCCTCCAGATTTCTA CACCAGGGTGGGAATAGCAGGGGTGCCAGACGACGTAGTAATGAAGAAAACAAAAGTAAAAGAGGACGACTGGACCCCGGTCTGGAACGAGGAGTTCACA TTCCCATTGACAGTTCCTGAACTAGCATTACTGAGAATTGAAGTTCACGAGTACGACATGTCCGAGAAGGATGATTTCGGTGGTCAGACTTGTTTGCCCG TCTCGGAACTGAGACCGGGAATTCGAGCAGTCCCGCTGTTTAGCAGGAAGGGCGAGAAGTACAATTCGGTGAAACTCCTGATGCGGTTCGAGTTTGTCTA G
AA sequence Show only first row Show all	>Lus10018241 pacid=23179333 polypeptide=Lus10018241 locus=Lus10018241.g ID=Lus10018241.BGIv1.0 annot-version=v1.0 MPVDQPRLFLSEVQGDADCISDAAEKIVASILHKRHHLVGRFGRNCLTADDFYRYLFSADLNPATVADQEYAFEASPYPVIITLEDHLTTGLQAKVAQMI KDTFGDMLYCPEAECLEEFPSPEDLKYRVIISTKPPMEYLKSKSSRRKRSKSQKEKDSEDDTWGKEVSVVSTDRDDSGLLSIKSSSDSSEYTDDELVPLA SSDYKRVIAIHAGKPKGGLKQALKVDENKVRRLSLSEQKLEKATENHGKEVIRFTQKNILRVFPKGTRVTSSNYKPLVGWMHGAQMVAFNMQGYGRALWL MHGMFRSNGGCGYVKKPDILMNPDKLFNPKSQLPVKKTLKVKVYSGDGWHLDFKQTHFDKYSPPDFYTRVGIAGVPDDVVMKKTKVKEDDWTPVWNEEFT FPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRPGIRAVPLFSRKGEKYNSVKLLMRFEFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	2.8	0.9150
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	4.5	0.9192
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	7.1	0.9195
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	11.1	0.9188
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	13.0	0.9056
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018240 [exp]	13.4	0.8569
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	17.0	0.8839
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	17.3	0.9103
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	20.0	0.8900
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	21.6	0.9130

Compare expression of checked genes

Lus10018241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.