Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 608 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 352 / 2e-109 CCR4 CRINKLY4 related 4 (.1) AT3G59420 253 / 7e-72 ACR4 crinkly4 (.1) AT1G06840 218 / 2e-59 Leucine-rich repeat protein kinase family protein (.1) AT1G24030 206 / 2e-59 Protein kinase superfamily protein (.1.2) AT3G58690 205 / 9e-59 Protein kinase superfamily protein (.1) AT1G67720 213 / 9e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 211 / 3e-57 Leucine-rich repeat protein kinase family protein (.1) AT3G26940 202 / 3e-57 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT5G28680 210 / 6e-57 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040663 [exp] 1324 / 0 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10028285 [exp] 532 / 7e-178 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10034646 [exp] 387 / 1e-127 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10029170 [exp] 363 / 2e-113 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10034647 [exp] 320 / 2e-95 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10012995 [exp] 272 / 2e-85 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10000764 [exp] 237 / 4e-66 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 235 / 2e-65 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10036935 [exp] 219 / 1e-59 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252400 [exp] 809 / 0 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 667 / 0 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 658 / 0 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 380 / 9e-120 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 351 / 5e-109 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.017G029900 [exp] 237 / 4e-66 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 234 / 3e-65 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.014G143100 [exp] 216 / 1e-62 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G159500 [exp] 225 / 7e-62 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 223 / 4e-61 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018242 pacid=23179321 polypeptide=Lus10018242 locus=Lus10018242.g ID=Lus10018242.BGIv1.0 annot-version=v1.0 ATGACTGCCCACCATCTTTCACATTTCGCCTTCTTACTTCTCACCGCCATCTCCTCCCTCACCTCCGCCTCCGCATCCACCGTTGCCGTCACCCAAACCA ACCCCCCGACCGTCTGCGGAATCGTCGCCGGACAGCCCACTCAGTACATCCAATGCTTCCACTACGGCCAATCCACTTCAATCCAACCCACCAATCTCTC CTTCGAATCCATCTCCGGCGGCCTCACCTTCTTCTGCGGCCTCGTCTCCGGCGGCTTCAGTCTCCTCTGCTGGGACATCGACGATTTAGGCTACTACTCC ACCACCTTCCACCCCAGACGAATCTACCACAGTGATTCGATCGCTCTCACAGATTTGTCCCTCGGCAGCAGCGGCCAGGTATGCGCTAGAGAGGTCGATT CCGGGATTGCCAAATGCTGGCGTGGTTTAGGGTTTCCGGATCCTGATCCGGATTTGTCCTTCAGTTCAATTACTGCCGGCGACGGGTTTGTTTGTGGGAT TTTGACGAATGACAGTACGGTTCACTGCTGGGGGAATCATTATACTAATAATAATAATAATGATTCTTCCGCGATGATTCAGTCTCAATTCGGAGATTTG AAAATGGAGAGCTTAGTTGCTGCGAAATCTCATAAGCATGTTTGTGGATTGACGAATTCAGGGGATTTGGTATGCAAAGGGATGAACGAATCGGGCCAAT TAAACGTTCCGGCGAATTCGGATTTTGAATTCTCCTCCGGCTTAGCTGCCGGGTCGGATTTCAACTGTGCGATTGGGGAGAAGAATGGGCTGTTGACTTG CTGGGGAAGAGGAGTGAACCGGGTTCAACTTAACTTCACCGGTAACGGAGTATTTTCAAATTCAAATTCGTTCGAATCTGTTTTCGCTAGCTCGGATTTC GTCTGCGGCTTGACGACGGGGAACTTAACGGTGACGTGCTGGGGAATCGGATGGACCGATTTCGACGGTAATCCGACTGAGCTTCCGTTAGGGGCTGTGA TTCCCGGTCCTTGCGTTCAATCTTCTTGTACCGATTGCGGATTGTATCCGAATTCTGAAGTACTCTGCTCCGGGTCGGGTAATATCTGCAAATCATGCCC GTTCCAGCTTCCGGTTGCGGCCCCATTGCCTCCGATTCTGAACATATCTCCACCGACCTCACCGCCGCCGTTTGAAGAGTCCGGTTCTGCTCCTCCACCA GCCCCACCACCGCCTTCGGAAAATCCTCTCCCTGTAGCAATCGTCGTGCTCGGTTCCGTCGGGGCTTTCGCAGGACTCTGCAGCATTGCGTTCTTCATAG CCGGACTGGTCCGTCAACGGAATAGGAATTTCGTCCAACCGTCATCCGCCGCCGCCGCGGCAACGACAGCGGCGGGAATTCCGGCTGTTCCACTCTCGTG GCGGCAGAGGAGCGGATCGTCGTCTAAATACACGGAATACAGAACAGAGAACTTCTCTCTGTCCGAATTAGCAGTGGCGACCGACGATTTCTCGCCGGAT AACAAGATCGGGACGGGGAGCTTCGGCGTCGTCTACAAGGGGACACTCGCCGACGGTCGGGAAGTCGCGATCAAGAGAGGGGAAGCAACAACGAGGATTA AAAAACTGAAGGAGAAAGAGAGCGCGTTCGATTCGGAGCTCGTTCTGCTGTCGCGACTCCACCATAAGCATCTGGTGGGACTTATCGGATTCTGCGAGGA ATTCAACGAGCATTTGCTGATCTACGAGTATATGGCAAACGGAGCTCTCTACGGCCACCTCCACCGCCAAAAAGACGGCGTATCGACGACGGGGATAATT TTGAATTCGTGGAAAATGAGGATCAAGATCGCTCTGGACGCGTCCAGAGGGATCGAGTACCTCCATAATTACGCTGTCCCGCCGATAATTCATCGGGACA TTAAGTCGTCCAACATTTTGTTGGACGCGAATTGGACGGCCCGAGTTTCTGATTTCGGGCTGTCGTTGATGGGGCCGGAGAATGAGGGAGGGCAGCATTT CATGTCGACGAAAGCGGTGGGGACGGTCGGGTATATCGACCCGGAGTACTACGTGTCGAACGTGTTGACGACGAAGAGCGACATTTACGGGCTAGGAGTG GTGTTGTTGGAGCTTCTGACGGGGAAGAGGGCGGTGTTCAGGAACGGTGAAGAGGACGGGGGAGGGCCGGTTGGGATAGTGGAGTATGCGGCGCCGCTGA TTTTGGCGGGGGAATTGGAATCGGTGTTGGATAAACGGGTCGGGTTGCCGTGGTCGTATGAGGCGGAGGCGGTGGCGATCATGGCGGGGCTGGCGGCGGA GTGTGTGAACTTGGAAGGGGTGGAGAGGCCTGACGTTGTTGATGTTGTAGGGAATTTGGAGAGGGCTTTTGGTCTTTGCCAAGAGTTTCAGGCTACATTC TCCAGTGGTTCACTGTCCGATTGA
AA sequence Show only first row Show all	>Lus10018242 pacid=23179321 polypeptide=Lus10018242 locus=Lus10018242.g ID=Lus10018242.BGIv1.0 annot-version=v1.0 MTAHHLSHFAFLLLTAISSLTSASASTVAVTQTNPPTVCGIVAGQPTQYIQCFHYGQSTSIQPTNLSFESISGGLTFFCGLVSGGFSLLCWDIDDLGYYS TTFHPRRIYHSDSIALTDLSLGSSGQVCAREVDSGIAKCWRGLGFPDPDPDLSFSSITAGDGFVCGILTNDSTVHCWGNHYTNNNNNDSSAMIQSQFGDL KMESLVAAKSHKHVCGLTNSGDLVCKGMNESGQLNVPANSDFEFSSGLAAGSDFNCAIGEKNGLLTCWGRGVNRVQLNFTGNGVFSNSNSFESVFASSDF VCGLTTGNLTVTCWGIGWTDFDGNPTELPLGAVIPGPCVQSSCTDCGLYPNSEVLCSGSGNICKSCPFQLPVAAPLPPILNISPPTSPPPFEESGSAPPP APPPPSENPLPVAIVVLGSVGAFAGLCSIAFFIAGLVRQRNRNFVQPSSAAAAATTAAGIPAVPLSWRQRSGSSSKYTEYRTENFSLSELAVATDDFSPD NKIGTGSFGVVYKGTLADGREVAIKRGEATTRIKKLKEKESAFDSELVLLSRLHHKHLVGLIGFCEEFNEHLLIYEYMANGALYGHLHRQKDGVSTTGII LNSWKMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPENEGGQHFMSTKAVGTVGYIDPEYYVSNVLTTKSDIYGLGV VLLELLTGKRAVFRNGEEDGGGPVGIVEYAAPLILAGELESVLDKRVGLPWSYEAEAVAIMAGLAAECVNLEGVERPDVVDVVGNLERAFGLCQEFQATF SSGSLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	0	1
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	1.7	0.8865
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	4.4	0.9015
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	5.3	0.8495
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	6.5	0.8866
AT5G64090			unknown protein		Lus10015829 [exp]	10.5	0.8575
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10026186 [exp]	12.3	0.7790
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	13.0	0.8814
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	13.4	0.8360
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	14.7	0.8722
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	16.1	0.8765

Compare expression of checked genes

Lus10018242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.