Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58620 99 / 8e-24 C3HZnF zinc finger (CCCH-type) family protein (.1) AT3G55980 72 / 1e-14 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G40140 71 / 4e-14 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040662 [exp] 405 / 4e-143 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10028970 [exp] 108 / 4e-27 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 100 / 3e-24 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 45 / 3e-05 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252600 [exp] 189 / 5e-56 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 174 / 2e-50 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.010G187900 [exp] 141 / 1e-38 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.008G069400 [exp] 127 / 8e-34 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.012G145800 [exp] 122 / 8e-32 AT2G40140 585 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.009G061000 [exp] 54 / 3e-08 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 46 / 1e-05 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 45 / 2e-05 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 44 / 4e-05 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 43 / 8e-05 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018243 pacid=23179350 polypeptide=Lus10018243 locus=Lus10018243.g ID=Lus10018243.BGIv1.0 annot-version=v1.0 ATGGATGTCGATATGGACTTGCTCGGGATGGAAGCTCATCGGAGGAGGAAGCAATTGATGGATGAATTCGCTGGCTTGAGTTCACCAACCGGCTGGACCG GTGATCGAACCGGAGAATTCGGCAAAATCGGAGGACTAAATCTAAATCCGACGAGTCTCGAAGACATATACGGAACTGTAGATCATCCCCTGCTTCTGTC TCAATTACAGGACATGAAATTGAAGCTCCGATCCACCTACCCGGCGGCTTTCCCGCCGTCTCCGGCGATGGAGCAGACCGGGTTCAATATGAATTCCCGG GCGGCTGCTTTTGCGAAGAGGAGCCAGAGCTTTGTGGGAAGGAGTTCGGTGAACCATCATCCAATGGGGTTTCCTTCCTCGCCGGGGAAACTTTCGGATT GGGGATCACCGGACGGGAAATTGGACTGGAAGATTCAAGGAGAAGAGCTGAGCAAGTTGAGGAAGTCTGCGTCATTTGCTTACCGCAGCAGCAGCAATGG GAATGTTGCGGAGCCGGATATGGGTTCGGGTATGAGATCCGGGAAAATGGGTGTTGGGGGTCCGAATCAGCAGCAAGGCCACCCGGAGCTTGGTGGTCCG GAAATGCTGCCGGCTTGGATGGAGCAATTCTATAGTGAGTCGGAGCAAATGGTGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10018243 pacid=23179350 polypeptide=Lus10018243 locus=Lus10018243.g ID=Lus10018243.BGIv1.0 annot-version=v1.0 MDVDMDLLGMEAHRRRKQLMDEFAGLSSPTGWTGDRTGEFGKIGGLNLNPTSLEDIYGTVDHPLLLSQLQDMKLKLRSTYPAAFPPSPAMEQTGFNMNSR AAAFAKRSQSFVGRSSVNHHPMGFPSSPGKLSDWGSPDGKLDWKIQGEELSKLRKSASFAYRSSSNGNVAEPDMGSGMRSGKMGVGGPNQQQGHPELGGP EMLPAWMEQFYSESEQMVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	0	1
					Lus10000858 [exp]	7.0	0.9723
AT3G50910			unknown protein		Lus10028325 [exp]	8.4	0.9660
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	8.9	0.9649
AT2G02370			SNARE associated Golgi protein...		Lus10007583 [exp]	9.2	0.9612
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	9.3	0.9713
AT4G02920			unknown protein		Lus10008158 [exp]	10.2	0.9707
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	11.8	0.9513
AT2G18210			unknown protein		Lus10041771 [exp]	12.2	0.9543
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Lus10001805 [exp]	12.6	0.9582
					Lus10000859 [exp]	12.8	0.9710

Compare expression of checked genes

Lus10018243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.