Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58630 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040661 [exp] 395 / 2e-139 AT5G58630 55 / 3e-08 unknown protein Lus10002480 [exp] 44 / 0.0001 AT5G01370 81 / 1e-16 ALC-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046900 [exp] 86 / 1e-18 AT5G58630 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018244 pacid=23179354 polypeptide=Lus10018244 locus=Lus10018244.g ID=Lus10018244.BGIv1.0 annot-version=v1.0 ATGAAACATTTGCTTCCAGACCGGGAAATGTGTTCCTCTTCCCGTAGCTCCCCAACTTCCGGCTGCATCTCCGGCCTTCTCACTCGGATCCTCTGCTCTC GCACTGCGCCGACTCACCCTTCCTATGATGCTAATTGTGATCTTGAGTTGGGTAGTACTAACCCAATTTGTCATAATCCTGTTGCTGCTCCCGGAATTAT CGCTAGGTTGATGGGTTTGGAGCAACTGGGTGGTGGTTCGATTTACAGAAGCCGGTCGATGAATTCGCTCGAGTTTGGTAAAGGTGGAATGGATGGATTT GAGGGGAAGAAGAAGAAGCACCACAGGCGGGTCAAGAGCACGACGATTTCGTTGACTGAAAACGATGACTTCCTTGTTCTCAGCTTTGAAGAATTTGGAA ACAGAGGAGATGGGAAAACAGAGGAAGCAGAGTTCATTGAGCAAATGGTGTCTAGAATCCTGACGGGGGAATCCGCCGTCAGAGATCGATTCTCTGGCGA AGAAACTCGAGATGCCAAGATTTCGAATTCGCGATGCCAAGAAGCAACGGAATGTTGTTGCAGTTCTTCGTCTTTGAGTCCGGTCTCTGTTCTAGATTCC AGCCGTCAATTCAGTCTCGATCACCAAGTCTCCACGTCATCAGAGGATTCAGAAACAGAGCCATCAGGTAAATTGAAGAAAGTTCTGCTCAAGCGGCTTC CTCCGGATCTGTGGGAGGGTGTCTGCAAGATGGCTGAAGCCGATGCCGTAGAAGGGCTAAATCCAAATCGAATGGCCCGATCGAAGCACAAGATCGGACA TTTTGAAATCGAAATGATTGGGGCCGAATTGGAATGGTACATACTGGATCAGTTGCTAGATGAATTGATGGGTGTACAACAATGTACATTGGTAACTTCA TTTTTGTCGGGGATCTAA
AA sequence Show only first row Show all	>Lus10018244 pacid=23179354 polypeptide=Lus10018244 locus=Lus10018244.g ID=Lus10018244.BGIv1.0 annot-version=v1.0 MKHLLPDREMCSSSRSSPTSGCISGLLTRILCSRTAPTHPSYDANCDLELGSTNPICHNPVAAPGIIARLMGLEQLGGGSIYRSRSMNSLEFGKGGMDGF EGKKKKHHRRVKSTTISLTENDDFLVLSFEEFGNRGDGKTEEAEFIEQMVSRILTGESAVRDRFSGEETRDAKISNSRCQEATECCCSSSSLSPVSVLDS SRQFSLDHQVSTSSEDSETEPSGKLKKVLLKRLPPDLWEGVCKMAEADAVEGLNPNRMARSKHKIGHFEIEMIGAELEWYILDQLLDELMGVQQCTLVTS FLSGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58630			unknown protein		Lus10018244 [exp]	0	1
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	2.4	0.8534
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	10.6	0.7953
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	18.5	0.8160
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	22.6	0.8235
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	25.9	0.8147
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	38.4	0.8141
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	52.5	0.7745
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020382 [exp]	53.7	0.7824
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	53.8	0.7661
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	58.3	0.7452

Compare expression of checked genes

Lus10018244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.