Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29980 539 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 527 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 520 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G12120 217 / 4e-67 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 105 / 9e-25 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040660 [exp] 742 / 0 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 644 / 0 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10038321 [exp] 642 / 0 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10027809 [exp] 521 / 0 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10005039 [exp] 465 / 3e-164 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10021045 [exp] 222 / 6e-69 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 221 / 2e-68 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 221 / 2e-68 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 217 / 5e-67 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252900 [exp] 573 / 0 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 544 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 535 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 533 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 532 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G046200 [exp] 224 / 5e-70 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 223 / 9e-69 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 220 / 2e-68 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 217 / 3e-67 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 174 / 5e-51 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10018245 pacid=23179290 polypeptide=Lus10018245 locus=Lus10018245.g ID=Lus10018245.BGIv1.0 annot-version=v1.0 ATGGGAATGGAAGCTGCTCATCCTACCGGCAACGGCAATGGCGTCGCCGTCATGAATGGCTCCGCCGCTAACAAACCCGATTTCGATCCCAGCGAGGCTC CTCCGTTCAAGATTGCCGACATCCGAGCCGCCATCCCTCCGCATTGCTGGGTGAAGAATCCATGGAGGTCACTCAGTTACGTCCTTAGGGATGCCGTTGT CATTCTCGCATTCGCCGCTGCCGCACTCAAGCTCGACCTCTGGGCTGTTTGGCCGCTCTACTGGATCGCTCAGGGCACCATGTTTTGGGCTGTCTTCGTT CTCGGCCACGATTGCGGCCATGGGAGTTTCTCGGATAGCTGGTTGCTGAACAATGTGGTGGGGCATATCCTGCATTCTGCAATCCTTGTACCTTACCATG GATGGAGAATTAGTCACAAAACTCATCACCAGAATCATGGCAATGTTGAGAAAGATGAATCATGGGTTCCGCTGCCAGAGAAAGTGTACAAGACTCTGGA CACAAGCACAAAATTCATGAGGTTCACTATCCCTCTCCCAATGTTTGCTTATCCTATCTACTTGTGGACAAGAAGCCCAGGGAAGAAAGGGTCCCATTTC AATCCCTACAGTGACCTGTTTGCCCCACAGGAAAGGAAATCAGTCTTAATCTCTACCATCTCTTGGATTTCCATGGTCCTAATCCTCCTCTACGCCTCCT TCCTATTTGGCTTCCTCACAGTCTTCAAAGTCTATACCGTCCCTTACCTGATATTTGTGGCGTGGCTGGACATGGTGACATACCTGCACCACCACGGGCA CGAAGAGAAGCTGCCGTGGTACAGAGGCAAAGAGTGGAGCTACCTACGTGGAGGGCTGACAACCGTAGATAGAGATTACGGGATTATCAACAACATCCAC CACGACATTGGCACTCACGTGATTCACCACCTCTTCCCTCAAATCCCTCACTACCATCTCGTAGAAGCGACAAAGGCAGCAAAGTCGGTGCTTGGGAAGT ACTACAGAGAGCCAAAGAAATCAGGGCCATTCCCATTCCACTTGTTCGACAACTTAGTGAGAAGCCTTGGCGAAGATCACTATGTTAGTGATGCAGGGGA TGTCGTGTTCTATCAGTCTGACCCAGACATCTTCAAGTTTTCCAAGTCCAAGTCAGCCTAA
AA sequence Show only first row Show all	>Lus10018245 pacid=23179290 polypeptide=Lus10018245 locus=Lus10018245.g ID=Lus10018245.BGIv1.0 annot-version=v1.0 MGMEAAHPTGNGNGVAVMNGSAANKPDFDPSEAPPFKIADIRAAIPPHCWVKNPWRSLSYVLRDAVVILAFAAAALKLDLWAVWPLYWIAQGTMFWAVFV LGHDCGHGSFSDSWLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVEKDESWVPLPEKVYKTLDTSTKFMRFTIPLPMFAYPIYLWTRSPGKKGSHF NPYSDLFAPQERKSVLISTISWISMVLILLYASFLFGFLTVFKVYTVPYLIFVAWLDMVTYLHHHGHEEKLPWYRGKEWSYLRGGLTTVDRDYGIINNIH HDIGTHVIHHLFPQIPHYHLVEATKAAKSVLGKYYREPKKSGPFPFHLFDNLVRSLGEDHYVSDAGDVVFYQSDPDIFKFSKSKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	0	1
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	1.0	0.9028
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	2.0	0.8768
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	5.2	0.8659
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	5.5	0.8396
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	8.7	0.8400
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	9.5	0.7787
					Lus10004594 [exp]	10.1	0.8052
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	11.2	0.8315
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	11.4	0.7882
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	13.0	0.8129

Compare expression of checked genes

Lus10018245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.