Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 243 / 1e-67 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G68940 215 / 3e-57 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 201 / 3e-53 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT2G28830 77 / 4e-14 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 74 / 4e-13 PUB15 Plant U-Box 15 (.1) AT1G23030 71 / 4e-12 PUB11 ARM repeat superfamily protein (.1) AT3G46510 67 / 4e-11 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 65 / 2e-10 ARM repeat superfamily protein (.1.2) AT1G10560 65 / 2e-10 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT5G01830 62 / 2e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040659 [exp] 1807 / 0 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 273 / 6e-77 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 187 / 2e-49 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 146 / 2e-35 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10005988 [exp] 135 / 5e-32 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 91 / 4e-18 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 88 / 2e-17 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10043453 [exp] 83 / 1e-15 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10012260 [exp] 70 / 6e-12 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007800 [exp] 283 / 1e-81 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 266 / 1e-75 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 204 / 1e-53 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 196 / 4e-51 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 177 / 2e-45 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 166 / 9e-42 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 132 / 4e-31 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 119 / 4e-27 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G079200 [exp] 107 / 2e-23 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 92 / 1e-18 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10018246 pacid=23179287 polypeptide=Lus10018246 locus=Lus10018246.g ID=Lus10018246.BGIv1.0 annot-version=v1.0 ATGACTTCGGCGCCGCCACTCCCGGCCGCCGTCGACTCAATCCACCGCTCACTTTCTGAACTCTGCTCCACCAGCCCCGACCAGGAGTCCTTCGAGAACA CTAAGCAGTTCACCGGCTACGCCCACCGTCTTCAGCTTGTTTTCAGTCAGATACTCCGGTCCTCGGCGTCACTCGAAGAACTTCCAGCTTCCGTTGAGAC CGGGCTCAGAGGAATCTCCGAGGATCTCTCCGTTGCTGCAGAAACAGTTTCTGTGTACAGGAAGAGGAGCAAGATCTTCGTGCTGGTTAACTGCCAGTCA CTTTCTGCGTCTCTACTGGAGCGGACGGTGGCGATGGGGACGTGGCTGGAACTGATTGAGTCCTCGCTGCTTGACGACTTCCTCTCCGATCTTCGCAAGA AGACCTCCGATCTCTCCCGTGACATGAAACAAGCGAAATTCAGGGTGACGGAAAACGAAGAGAGAGTCCGTCGCACATTAGAGAAGGAAGGACAGGGAAG GATGTCGAGCAAAGCTGTGCAAAGCGCGATCATCATGGATTTAGCAAGAGCTCTCGGAATTGATGCGAGTAACCACCAAGAGCTATCTGAGCAAGTGAAG CTGTTCAAAACTGATGTGGCGCGATCAAGTTCCGTCGCAGAAAGGAGAATTATGATCTCTTTGGAGAAAATTCTTGATAACTGGTCGAGCGACCCTGATT CGGAGGCACTGAATGAGGATTTGAATTCAGAAGATGAAGCTCACTTGTCACCATTCAGGAATTTCCTTTGTCCATTGACCAAAGAATATATGAAGGAGCC TGTTGTGGTGTTGGAGTCTTCCCAGAACTATGATAAGAAAGCCATATTATACTGGTTTTCCAGATGTGTTGAGGATGGCCGTGACCCTACTTGTCCTGTC ACTGGGATGGTGCTGAAGACGACGGAACTGAAGCCAAATCTTGGGCTGGCCGGAGCGATAGATGAGTGGATTTGTAGGAACGTCGAAGTCCGTGTTAATT CTTCAGTGGAACATATCAGTAAAGAGCCTTTTGTTAAGGAGTCAATTGAACGTGCATTGGACAGTGTTTACAGGATCTCTGAAGAGCATTCTTCCTATCG GTATAAAGTGAGGAACGCTGGCTTGGTTGTCCTTATTGTCAACTTGCTTCGAAAGTCGTCCAAGGACTTGGGCAGTCGTCTGAGGGGCAAAGCTCTAATG GCTTTGCTTAGCATGGCCAAGGATGAAGAAAGCAAGAAAATGATGCTGGAAGAGGGTGTGACTAGACTAGCTGTACATAGTCTGGTTGGAAGTTCAGACA AAGAGAGAGAATATGCTGTGAAGTTATTGCTGGAGTTCAGTAATGATGAAGATTACTGCATCAAAATTACATCAGAAAAGGGAGCACTATTTCTTCTATC TAGTATGGCAGGCAATCTGGAGAATCCTGCTTTGTCAAATCTTGCAGATGAGTTGTTAAAGAGGATGGAAAGCATGGAAGAGAATATTCAGGTTTTGGCC GCAGCTGGCAGATTCAAGCCCTTGCTTGCTCGTCTATGTCAAGGTTCGGATGACGATAAAATAGAGATGGCATCTATTCTGGGAAGAATGACCTTAACGA ATAGCAGTAAAGAAGAAATTGCAAGGAGAAGTGCCAAGATACTTGTTGAGTTGCTTTCTAATCCTGAAGCACGGGTACCTAGCTTGAAAGCCTTGTGCAA CCTATCGAGTTTGGATGACAATGCAACTATCCTTGTTGATGCTAATGCACTTCCTGTGCTGACTGAAATCATTTTGGATAACGAGACCGTTTCGTCATCA GAACTCGTGGAATTGGCCACATCAGCAATCGCAAATATAGTATCGAATCCGGGACACTGGGAGTTGACTACTGTTGACAAGAGTGGTAACACAATGCAGT CTGCATCAATCGTCTCAAGTCTTCTTCAGCTTCTATCCGTTGCCTCGTCCCCTGCTCAAGCTTCCATACTCCAAATCCTCTACGGAATAGCATCGTCTCC CAGGGCTGCAGAATCAGTAGCTAGCAGAATCAAGAGTAGTAATGGCATTAAAACAGTGATCAGTTATCTTGAGCACCCGGAAATTGGACATCGAATCAAC GCTTTTAGGCTTACAAGATTGCTTTCGGAAAGGTTCGCCCAAGCCTTCTTCTATGAGATACAAACTTGTAACAAGAATTCATTGCTGAAAGACAAACTAT TGGATGACCAATCTACAGATACAGAAAGATCCGACGCTGCCTGCATATTGGCTAACCTTCCTTTCTCAGGTGACGAAGTGAAATCACTGCTTGATCCCAG TTTCGTGAGATGGATAGTCTCCACTCTCAAAACCCGGAATCGCAACGCCAATGGCAAATCATCTCGAACTTCATCATCATCATCGTCAAGCATGACAGAA GGGCTTCTTGGAATACTACTACACTTCACCAAACGCCTCGATGATGATCAAACTTTTCTAAGCCTGGTGAGAGAGCTTCGTCTCATGACCCTTCTCCGCG AAGAACTCGGTTTCCCTTCCAAGCCGAGAATCAAACAGCTAGCTGCTCTTGGACTGAGAAACTTATCAGAATCAGCTAGTCGGAATCCTGATCAACAACC TCCTCCTCCTCAAGGATTTTGGGTTCCTATCATCTTCATCTGCGGCAGAGTCCCTCCGAAACTTTCGACTTGCCCGATACACACCGACATTTCCTGCGAC CATGATGGCTCCCAGCTGTGTCTACTAAGTAACGACTGCATCAAGCCGTTGATGGATCTTCTTTCGGACGATAATACCAACGTGCAAATCGCAGCAGTGG AGGCATTGTCGACACTCGTACCAGCTGATAATTCGTCCGAGATTACCAAGAGAGGCATGAACGAGTTCGAACAGTTCCGAGTGGTGGATGCTGTGATTGA TCTGTTCATGAAACTGAGACCAGGGGAGCTACAAGAGAAGACGTTATGGATGGTTGATAAGTTCATGAGAGCAGAAGGTTGTAGCCATAGGCATTCACTG AACCAGTCGCTGGTTGGAGCCTTGGTCGAGGCTTTGAAGCATGGGAATGGGAACACCAAAAGGTATGCGCAGGATGCGCTGACGAATCTGAAACAGTTGT CCGGTGTTAGCGGGACTGGTTCCGGCCAAGTTCCGTCCCAAAGATAA
AA sequence Show only first row Show all	>Lus10018246 pacid=23179287 polypeptide=Lus10018246 locus=Lus10018246.g ID=Lus10018246.BGIv1.0 annot-version=v1.0 MTSAPPLPAAVDSIHRSLSELCSTSPDQESFENTKQFTGYAHRLQLVFSQILRSSASLEELPASVETGLRGISEDLSVAAETVSVYRKRSKIFVLVNCQS LSASLLERTVAMGTWLELIESSLLDDFLSDLRKKTSDLSRDMKQAKFRVTENEERVRRTLEKEGQGRMSSKAVQSAIIMDLARALGIDASNHQELSEQVK LFKTDVARSSSVAERRIMISLEKILDNWSSDPDSEALNEDLNSEDEAHLSPFRNFLCPLTKEYMKEPVVVLESSQNYDKKAILYWFSRCVEDGRDPTCPV TGMVLKTTELKPNLGLAGAIDEWICRNVEVRVNSSVEHISKEPFVKESIERALDSVYRISEEHSSYRYKVRNAGLVVLIVNLLRKSSKDLGSRLRGKALM ALLSMAKDEESKKMMLEEGVTRLAVHSLVGSSDKEREYAVKLLLEFSNDEDYCIKITSEKGALFLLSSMAGNLENPALSNLADELLKRMESMEENIQVLA AAGRFKPLLARLCQGSDDDKIEMASILGRMTLTNSSKEEIARRSAKILVELLSNPEARVPSLKALCNLSSLDDNATILVDANALPVLTEIILDNETVSSS ELVELATSAIANIVSNPGHWELTTVDKSGNTMQSASIVSSLLQLLSVASSPAQASILQILYGIASSPRAAESVASRIKSSNGIKTVISYLEHPEIGHRIN AFRLTRLLSERFAQAFFYEIQTCNKNSLLKDKLLDDQSTDTERSDAACILANLPFSGDEVKSLLDPSFVRWIVSTLKTRNRNANGKSSRTSSSSSSSMTE GLLGILLHFTKRLDDDQTFLSLVRELRLMTLLREELGFPSKPRIKQLAALGLRNLSESASRNPDQQPPPPQGFWVPIIFICGRVPPKLSTCPIHTDISCD HDGSQLCLLSNDCIKPLMDLLSDDNTNVQIAAVEALSTLVPADNSSEITKRGMNEFEQFRVVDAVIDLFMKLRPGELQEKTLWMVDKFMRAEGCSHRHSL NQSLVGALVEALKHGNGNTKRYAQDALTNLKQLSGVSGTGSGQVPSQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	0	1
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	3.3	0.8184
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	4.2	0.8001
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	5.8	0.8003
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	9.9	0.7761
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	10.0	0.7777
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	13.7	0.7453
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	15.5	0.7821
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	16.5	0.7487
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	19.3	0.7578
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	21.7	0.7597

Compare expression of checked genes

Lus10018246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.