Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47300 172 / 1e-54 SELT SELT-like protein precursor (.1) AT5G58640 166 / 1e-51 Selenoprotein, Rdx type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040658 [exp] 224 / 3e-75 AT3G47300 245 / 2e-83 SELT-like protein precursor (.1) Lus10001253 [exp] 155 / 3e-47 AT3G47300 269 / 4e-92 SELT-like protein precursor (.1) Lus10002479 [exp] 153 / 9e-47 AT3G47300 270 / 3e-92 SELT-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047000 [exp] 180 / 3e-57 AT3G47300 255 / 1e-86 SELT-like protein precursor (.1) Potri.001G253000 [exp] 177 / 6e-56 AT3G47300 253 / 2e-85 SELT-like protein precursor (.1) Potri.016G117600 [exp] 156 / 7e-48 AT5G58640 224 / 4e-74 Selenoprotein, Rdx type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF10262 [flax] [poplar] Rdx Rdx family
Representative CDS sequence Show only first row Show all	>Lus10018247 pacid=23179357 polypeptide=Lus10018247 locus=Lus10018247.g ID=Lus10018247.BGIv1.0 annot-version=v1.0 ATGAACAGAGGTGCAGCTTCTACTGTTTGGCTCTTCCTACTGTTCTCCGATCTCGTCAATCTATTCACTCCGCCGCCTGCTAAACCGGCTTCACATCATC AACATCACCACCATCATCACAAACAACCACGGCCTCCGGCGGTTGTGGGAAACCTAGATATTTATGTGCAGAAGCCGGCGATTGGAGGCATCGGTATCGG CGGTACTGTGAAGATTGATTTCTGCTCATCATGCTCTTACAAGGGCACTGCTGTATCGATGACAAAAATGTTGGAGAATCAGTTTCCTGGAGTTGAAGTG ATTCTAGCAAATTATCCTGCGCCACTGCCAAAAAGGATAGCATCTAAGTTGGTTCCGGTTCTGCAAGTTGGGGTGATTGCAGTGATTGTGGCTGGGGAAC ATATCTTTCCTATGATAGGGATCATGGCTCCACCCCCGTGTCTTTTCCTACAAGGCTCCGGTGCTTTTGAAGTTTACTGCAACAATGAACTGGCCTTCTC GAAGCTGAAGGAAGGCAGGTTTCCTGGAGAGATTGAATTGCGAGAACTTGTACGTAGCGCATTGACCGGAACCAGCATTTCAAATGCACGGTGA
AA sequence Show only first row Show all	>Lus10018247 pacid=23179357 polypeptide=Lus10018247 locus=Lus10018247.g ID=Lus10018247.BGIv1.0 annot-version=v1.0 MNRGAASTVWLFLLFSDLVNLFTPPPAKPASHHQHHHHHHKQPRPPAVVGNLDIYVQKPAIGGIGIGGTVKIDFCSSCSYKGTAVSMTKMLENQFPGVEV ILANYPAPLPKRIASKLVPVLQVGVIAVIVAGEHIFPMIGIMAPPPCLFLQGSGAFEVYCNNELAFSKLKEGRFPGEIELRELVRSALTGTSISNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	0	1
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	1.0	0.8547
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	2.4	0.8094
					Lus10033126 [exp]	2.4	0.8477
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	4.2	0.8030
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	5.5	0.8275
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	6.6	0.7980
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	8.1	0.8109
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	10.2	0.8090
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	10.8	0.8168
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	11.7	0.8056

Compare expression of checked genes

Lus10018247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.