Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07180 328 / 2e-110 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 317 / 5e-106 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT4G28220 59 / 2e-09 NDB1 NAD(P)H dehydrogenase B1 (.1) AT2G20800 58 / 2e-09 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G05020 52 / 1e-07 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 52 / 2e-07 NDB3 NAD(P)H dehydrogenase B3 (.1) AT5G08740 50 / 1e-06 NDC1 NAD(P)H dehydrogenase C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040657 [exp] 404 / 6e-140 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 374 / 2e-128 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 368 / 5e-126 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 292 / 8e-96 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 287 / 9e-94 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10039769 [exp] 63 / 6e-11 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018541 [exp] 63 / 7e-11 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10011259 [exp] 56 / 1e-08 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 56 / 2e-08 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047100 [exp] 327 / 5e-110 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 293 / 5e-96 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 291 / 3e-95 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.013G147300 [exp] 59 / 2e-09 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 58 / 2e-09 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.004G034100 [exp] 57 / 3e-09 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147200 [exp] 56 / 8e-09 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.011G042500 [exp] 55 / 2e-08 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.007G098700 [exp] 49 / 3e-06 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018248 pacid=23179313 polypeptide=Lus10018248 locus=Lus10018248.g ID=Lus10018248.BGIv1.0 annot-version=v1.0 ATGAAAGATGTCCACAAAAGGCACGCCCATGTCAAGGATTACATCCGTGTTACTTTGATAGAGGCAAATGAGATATTGTCTTCTTTGGACGATCGTTTGC GGCAGTATGCAACCAGGCAGTTGACCAAGTCAGGGGTTCGGCTTGTTCGCGGCATAGTGAAAGATGTCGAACCTCACAAGATACTTCTCGACAATGGGAC TGAGGTTGGTTCCATATGGTTTATTAGTTTGGTCTACTGGCGTAGGCCTTTCGTCTCTAGTGAAATCTCTGGACCTTCCGAAATCTCCAGGATTGGGGTC GACGAATGGCTACGGGTACTTAATATGCCGGATGTGTTTGCAATCGGCGACTGCAGTGGTTTCGTTGAAAGTACCGGCAAACAAGTCCTGCCGGCATTGG CACAGGTTGCAGAGAGGCAAGTGAAATATCTCGCAGCTCAACTGAATCGAATCGGTAAAGCTGGTGTAGGTCGCGCAAACAGTGGAGCGGACATGGATGC AGGGGAGCCTTTTGTGTACAAACATATGGGAAGCATGGCTACAATCGGGCGGCATAAGGCTCTTGTGGATCTTCGGCAAAGCAAAGTCGTAGCCCTTCTT TCTTCTATTTTGGTTTGTACCCTTTTGTTTCAGTTTTCCATTGATTTCTCGGACAGTTTCGATTTCCCTTTAACCTTGCAGAAGGGTAAAGGAATATCAA TGGCTGGTTTCGTAAGCTGGTTCATATGGCGGTCAGCATATCTTACACGAGTTGTAAGTTGGAGGAACCAGTTCTATGTTGCTGTTAACTGGCTTACAAC TATGGTATTTGGTCGTGATATCAGCAGACTATGA
AA sequence Show only first row Show all	>Lus10018248 pacid=23179313 polypeptide=Lus10018248 locus=Lus10018248.g ID=Lus10018248.BGIv1.0 annot-version=v1.0 MKDVHKRHAHVKDYIRVTLIEANEILSSLDDRLRQYATRQLTKSGVRLVRGIVKDVEPHKILLDNGTEVGSIWFISLVYWRRPFVSSEISGPSEISRIGV DEWLRVLNMPDVFAIGDCSGFVESTGKQVLPALAQVAERQVKYLAAQLNRIGKAGVGRANSGADMDAGEPFVYKHMGSMATIGRHKALVDLRQSKVVALL SSILVCTLLFQFSIDFSDSFDFPLTLQKGKGISMAGFVSWFIWRSAYLTRVVSWRNQFYVAVNWLTTMVFGRDISRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10018248 [exp]	0	1
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	1.7	0.9029
					Lus10011047 [exp]	11.7	0.8846
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	14.7	0.8886
					Lus10000538 [exp]	15.0	0.8264
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	17.2	0.8640
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	18.7	0.8560
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	18.8	0.8257
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	22.2	0.8801
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10000807 [exp]	24.7	0.8479
AT3G27050			unknown protein		Lus10032042 [exp]	25.7	0.8269

Compare expression of checked genes

Lus10018248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.