Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29990 267 / 1e-86 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 263 / 6e-85 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT4G28220 108 / 1e-26 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 105 / 2e-25 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 103 / 6e-25 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 103 / 7e-25 NDB4 NAD(P)H dehydrogenase B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040657 [exp] 379 / 3e-130 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 304 / 4e-101 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 300 / 2e-99 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 241 / 3e-76 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 238 / 6e-75 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018541 [exp] 114 / 2e-28 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 114 / 2e-28 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 110 / 4e-27 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 110 / 4e-27 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047100 [exp] 270 / 8e-88 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.004G036300 [exp] 237 / 2e-74 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 234 / 1e-73 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.013G147300 [exp] 120 / 1e-30 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 119 / 2e-30 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.011G042500 [exp] 110 / 3e-27 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.004G034100 [exp] 109 / 9e-27 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147400 [exp] 106 / 7e-26 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10018249 pacid=23179382 polypeptide=Lus10018249 locus=Lus10018249.g ID=Lus10018249.BGIv1.0 annot-version=v1.0 ATGGCCTGGCTCCGCACCCTGACCCGAATCTCCACCTCCCTCAAATCTTCAGCGCGGCCGGCGAGAATCTCTCCTCCGTATCTGCTACTGACATCTCTTT CTTCGCATTTCAGCACCGCCGCTGGAGCGTCCCCAGCGGTAAAAATTCGGCCTCCGAGTTTGGGGGACTTGGAGGCGACGAGGGCAGGAGAGAAGCAGAG GGTGGTGGTGCTGGGATCCGGATGGGCAGGGTGCCGGTTGATGAAGGGCATTGATACTAGCATCTACGACGTTGTTTGCGTGTCGCCGAGGAACTACATG GTGTTCACGCCGCTGCTTGCGTCGACGTGCGTGGGTACGCTGGAGTTCAGGTCGGTTTCGGAGCACGTGGCCCGGATCCAGCCCGCAATTTCTACCGAGC CCGGGTCACACTTCTTCCTGTCTCGTTGCAAGGGGATCAATGCTAAGAATCATGTGGTGGATTGGGCTTCTCAACTCTTTTTTCAACGTTTCTATCGTAT GGATATTTGGTACATAGCTCCTCGAAATTTGGATTTAAGGGTGAATTGCGAGAGTATGACTGATGGGCAAACCACACTGGAGCCATGGAAGTTCAACATA TCGTACGACAAGATGGTAATCGCTTTGGGAGCAGAGGCCACCACATTCGGAAACCATGGAGTCAAAGAACACGCCGTCTTCCTCAGGGAAGTTCACCATG CTCAACAAATTCGGAGGAAGCTGCTCCTGAATTTGATGCTTTCTGACATCCCAGGCACCACGGAAGAGCAGATTACTGCATTGTGTCGTAGTCGGAGGTG GCCCAACGGGAGTCGAATTCAGCGGCGAGCTTAG
AA sequence Show only first row Show all	>Lus10018249 pacid=23179382 polypeptide=Lus10018249 locus=Lus10018249.g ID=Lus10018249.BGIv1.0 annot-version=v1.0 MAWLRTLTRISTSLKSSARPARISPPYLLLTSLSSHFSTAAGASPAVKIRPPSLGDLEATRAGEKQRVVVLGSGWAGCRLMKGIDTSIYDVVCVSPRNYM VFTPLLASTCVGTLEFRSVSEHVARIQPAISTEPGSHFFLSRCKGINAKNHVVDWASQLFFQRFYRMDIWYIAPRNLDLRVNCESMTDGQTTLEPWKFNI SYDKMVIALGAEATTFGNHGVKEHAVFLREVHHAQQIRRKLLLNLMLSDIPGTTEEQITALCRSRRWPNGSRIQRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Lus10018249 [exp]	0	1
AT5G10010			unknown protein		Lus10006744 [exp]	4.9	0.8500
					Lus10005396 [exp]	5.9	0.9003
					Lus10003840 [exp]	8.4	0.9003
					Lus10000784 [exp]	10.2	0.9003
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	11.8	0.9003
					Lus10012429 [exp]	13.2	0.9003
					Lus10022573 [exp]	14.5	0.9003
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	15.7	0.9003
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	16.7	0.9003
					Lus10006661 [exp]	17.7	0.9003

Compare expression of checked genes

Lus10018249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.