Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53400 192 / 5e-61 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1) AT4G27890 188 / 1e-59 HSP20-like chaperones superfamily protein (.1) AT5G58740 45 / 3e-06 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040656 [exp] 305 / 6e-107 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10019028 [exp] 190 / 5e-60 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10005009 [exp] 190 / 1e-59 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10027048 [exp] 93 / 7e-25 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1) Lus10040670 [exp] 54 / 2e-09 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) Lus10018234 [exp] 55 / 3e-09 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132500 [exp] 196 / 1e-63 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 194 / 7e-62 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.012G014100 [exp] 191 / 1e-60 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.015G013900 [exp] 191 / 2e-60 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G251204 [exp] 52 / 1e-08 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10018250 pacid=23179389 polypeptide=Lus10018250 locus=Lus10018250.g ID=Lus10018250.BGIv1.0 annot-version=v1.0 ATGGCGATCCTCTCCGAAATCGTCGAAGAAACCCAACAACAACAACCACAACAGCAACAACCGATCGAATCAAAGAAGGAGAAAAAAGCCTCATCGTCTC CGGTTCCCAACGCCGGAAACGGCCTCAATTTGGAGAACTACTCATGGGGGCAGAGTCTCGAAGAGGTTACGATCACAATCCCGGTACCTCAAGGCACTAG ATCGAAGCAGATCACCTGCGAGATCAAGAAGAAATCCCTGAAGCTCGAAATCAAAGGATCGCCGACGATCATCGAAGGGGAGCTGTACGGCGCGGTGAAA GTCGGGGAGTCGTTCTGGAACTTGGAGGATCAGAAGATTGTTTCGATTCTGCTGACGAAATCGGCGGACGACAAGAAGAATTGGTGGAAGTCGCTGATGA AAGGAGGGCCGGAGATAGACGTGCAGAAGGTGGAGCCGGAGCCGAGCAAGATGAGCGATTTGGATCTGGAGACGAGGTCGGCGGTGGAGAAGATGATGTT CGACCAGAGGCAGAAGCAGAGAGGGTTGCCTACCAGTGCGGTGATTGAGCAGCAGGAGATTCTGAAGAAGTTTGATATGTCCAAGATGAAGTTTGTCGAT AAGTTTAGCAATATGCCTTGA
AA sequence Show only first row Show all	>Lus10018250 pacid=23179389 polypeptide=Lus10018250 locus=Lus10018250.g ID=Lus10018250.BGIv1.0 annot-version=v1.0 MAILSEIVEETQQQQPQQQQPIESKKEKKASSSPVPNAGNGLNLENYSWGQSLEEVTITIPVPQGTRSKQITCEIKKKSLKLEIKGSPTIIEGELYGAVK VGESFWNLEDQKIVSILLTKSADDKKNWWKSLMKGGPEIDVQKVEPEPSKMSDLDLETRSAVEKMMFDQRQKQRGLPTSAVIEQQEILKKFDMSKMKFVD KFSNMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	0	1
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	1.4	0.9150
					Lus10033310 [exp]	2.4	0.9139
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	4.6	0.9124
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	5.9	0.9042
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	6.0	0.9042
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	6.5	0.8887
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	6.9	0.8843
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	6.9	0.8947
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	9.7	0.8685
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	9.8	0.8757

Compare expression of checked genes

Lus10018250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.