Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 192 / 1e-57 RLK1 receptor-like protein kinase 1 (.1) AT5G24080 137 / 1e-38 Protein kinase superfamily protein (.1) AT1G34300 135 / 7e-37 lectin protein kinase family protein (.1) AT2G19130 127 / 3e-34 S-locus lectin protein kinase family protein (.1) AT4G32300 125 / 1e-33 SD2-5 S-domain-2 5 (.1) AT4G00340 122 / 2e-32 RLK4 receptor-like protein kinase 4 (.1) AT1G60800 114 / 8e-30 NIK3 NSP-interacting kinase 3 (.1) AT4G18250 113 / 3e-29 receptor serine/threonine kinase, putative (.1) AT5G35370 112 / 6e-29 S-locus lectin protein kinase family protein (.1) AT5G38280 110 / 3e-28 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030400 [exp] 269 / 3e-89 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 234 / 9e-73 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 228 / 1e-70 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 227 / 4e-70 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031804 [exp] 182 / 4e-57 AT5G60900 234 / 2e-71 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 191 / 8e-57 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 180 / 9e-53 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10009916 [exp] 151 / 4e-48 AT5G60900 94 / 6e-24 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 166 / 9e-48 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085100 [exp] 228 / 1e-70 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211866 [exp] 212 / 4e-68 AT5G60900 346 / 4e-113 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 214 / 1e-65 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T084800 [exp] 213 / 4e-65 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 207 / 9e-63 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 206 / 2e-62 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211532 [exp] 190 / 2e-62 AT5G60900 164 / 1e-47 receptor-like protein kinase 1 (.1) Potri.T084351 [exp] 197 / 3e-62 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 205 / 5e-62 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 205 / 6e-62 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018251 pacid=23179297 polypeptide=Lus10018251 locus=Lus10018251.g ID=Lus10018251.BGIv1.0 annot-version=v1.0 ATGGAGTTGCTAGAGGGCTTGTTTACCTCCATGATGAATGCAGCAACCAGATCATACGTCAAGCCTCAAAATGTTCTGCTAGACGAATCAATGACAGCCA AGATCTCCGATTTCGGGCTGGCAAAGCTTCTAATGGCGAACCAGACCCGGACAACGACTGGAATCAGGGGGACGAAAGGGTACGTGGCTCCAGAGTGGTT CAGGAACATGCCTGTCACGGCTAAAGTCGATGTTCACAGCTTTGGGATTCTGCTGTTGGAGCTGGTTTGTTGCAGGAAAAAGATGGAACTGGAGGCGGCA AGTGAAGAGGAAGTGATGCTCCCCGAGTGGGCATATGATTGCTACAGTCAAGGTCAATTGAAGAGGCTCGTGAATGACGACGTGGAGGCAATGGCTGACA TGGGGAGAGTCGAGAGATTCGTCAAGGTTGCGTTCTGGTGCATTCAGGACGATCCGTCAATGAGACCTGCAATGAAGAAAGTTGTTCATATGCTGGAAGG ATCTGACCATGTCCCTCCTCCTCTAGATCCAGATTCCTTCATCAGCACCATATGA
AA sequence Show only first row Show all	>Lus10018251 pacid=23179297 polypeptide=Lus10018251 locus=Lus10018251.g ID=Lus10018251.BGIv1.0 annot-version=v1.0 MELLEGLFTSMMNAATRSYVKPQNVLLDESMTAKISDFGLAKLLMANQTRTTTGIRGTKGYVAPEWFRNMPVTAKVDVHSFGILLLELVCCRKKMELEAA SEEEVMLPEWAYDCYSQGQLKRLVNDDVEAMADMGRVERFVKVAFWCIQDDPSMRPAMKKVVHMLEGSDHVPPPLDPDSFISTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10018251 [exp]	0	1
					Lus10021772 [exp]	24.0	0.4988
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	42.6	0.5247
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	101.2	0.4646
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	108.4	0.4540
AT4G19570			Chaperone DnaJ-domain superfam...		Lus10028524 [exp]	237.9	0.3777

Compare expression of checked genes

Lus10018251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.