Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67200 112 / 5e-28 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 100 / 4e-24 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 100 / 5e-24 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 98 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 94 / 1e-21 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 93 / 2e-21 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 91 / 1e-20 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 89 / 4e-20 RKL1 receptor-like kinase 1 (.1) AT1G50610 87 / 1e-19 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 87 / 2e-19 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040653 [exp] 367 / 6e-125 AT1G68400 331 / 5e-105 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013073 [exp] 107 / 2e-26 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 105 / 1e-25 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031350 [exp] 102 / 9e-25 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10029075 [exp] 102 / 1e-24 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 102 / 1e-24 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 102 / 2e-24 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018733 [exp] 101 / 3e-24 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010973 [exp] 92 / 4e-21 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154700 [exp] 221 / 2e-68 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.004G066300 [exp] 217 / 8e-67 AT3G02880 301 / 4e-94 Leucine-rich repeat protein kinase family protein (.1) Potri.003G020600 [exp] 106 / 3e-26 AT2G36570 293 / 6e-90 Leucine-rich repeat protein kinase family protein (.1) Potri.007G046900 [exp] 103 / 6e-25 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 102 / 9e-25 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G141200 [exp] 97 / 6e-23 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 96 / 2e-22 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 94 / 6e-22 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 91 / 7e-21 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 89 / 4e-20 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018254 pacid=23179392 polypeptide=Lus10018254 locus=Lus10018254.g ID=Lus10018254.BGIv1.0 annot-version=v1.0 ATGAATTTACCTCCCAACACAATCTCTGCAGCCGCGGCGGCGGTGGTTCTGGCTCTGCTTCTCTGCTCTGTCGGAGTCGTTGACTCCAACAATGACTTCT ACCCTGACGAAAGAAACGCCCTGCTCCAGATCAGAGATTCCGTTCCTTCCACGGCGAATCTCCACGCGCTCTGGACCGGACCGTCATGTCGTGGGAATTC GAGCCGCTGGGCCGGGATCGCCTGCAAGAACGGCCACGTGGTTCATTTGGTTCTCCAGGGAATCAACCTGACGGGGAATCTCCCCACAGGTTTTCTCCGG AACATAACATTTCTGACCAAGCTCAGCTTGGTCAACAACTCCATCTCCGGTTTGCTTCCGGACCTGACCGGTCTCATCAGGATGGAGCAGGTGCTCCTCT CGTCCAATAGCTTCACCGGTTCGATCCCTCCGGACTATACTTCCTTGCCGAATTTAGAGTTCATGGAGCTGGAACGTAACTCTCTAGAAGGACCGATCCC GAGTTTTAACCAGTCCGGTTTGACCCGGTTCAACGTGTCGTACAACCGGCTCGGTGGTCCGATTCCTCAGACCGAAACTTTGGAGAGGTTTCCGGAAAGC TCATTTGATCATAACTCAGGTGGCCTCTGTGGGCCGCCGTTGGCGGCTTGTCCTGTTTTCCCTCCGCCCCCGCAGCCGCCGAAAACCGACTCCGCCAGCG GCAGGGGGGAGGAAGAGGAGGTTTAA
AA sequence Show only first row Show all	>Lus10018254 pacid=23179392 polypeptide=Lus10018254 locus=Lus10018254.g ID=Lus10018254.BGIv1.0 annot-version=v1.0 MNLPPNTISAAAAAVVLALLLCSVGVVDSNNDFYPDERNALLQIRDSVPSTANLHALWTGPSCRGNSSRWAGIACKNGHVVHLVLQGINLTGNLPTGFLR NITFLTKLSLVNNSISGLLPDLTGLIRMEQVLLSSNSFTGSIPPDYTSLPNLEFMELERNSLEGPIPSFNQSGLTRFNVSYNRLGGPIPQTETLERFPES SFDHNSGGLCGPPLAACPVFPPPPQPPKTDSASGRGEEEEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67200			Leucine-rich repeat protein ki...		Lus10018254 [exp]	0	1
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	14.1	0.7494
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041043 [exp]	19.6	0.7573
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	23.0	0.7715
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	32.2	0.7699
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	39.4	0.6892
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	48.1	0.7338
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10017521 [exp]	49.1	0.7160
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	57.4	0.6952
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	63.6	0.6713
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	70.4	0.6906

Compare expression of checked genes

Lus10018254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.