Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36570 258 / 2e-80 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 241 / 5e-74 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 241 / 8e-74 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 239 / 4e-73 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 238 / 6e-73 RKL1 receptor-like kinase 1 (.1) AT5G16590 230 / 4e-70 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G35390 230 / 9e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 230 / 1e-69 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 229 / 2e-69 RLK902 receptor-like kinase 902 (.1) AT2G07040 226 / 3e-68 ATPRK2A Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040653 [exp] 596 / 0 AT1G68400 331 / 5e-105 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10017756 [exp] 251 / 1e-77 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 241 / 1e-77 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017178 [exp] 246 / 3e-75 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 241 / 6e-74 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017996 [exp] 241 / 8e-74 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 240 / 1e-73 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10035012 [exp] 238 / 1e-72 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031909 [exp] 232 / 1e-72 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154700 [exp] 445 / 2e-153 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.004G066300 [exp] 431 / 5e-148 AT3G02880 301 / 4e-94 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 263 / 4e-82 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 249 / 4e-77 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 248 / 9e-77 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 246 / 2e-76 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 243 / 8e-75 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 241 / 2e-74 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G044600 [exp] 239 / 3e-73 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.017G130600 [exp] 238 / 4e-73 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018255 pacid=23179378 polypeptide=Lus10018255 locus=Lus10018255.g ID=Lus10018255.BGIv1.0 annot-version=v1.0 ATGCTTTGCTTGATCCGTTTCAGGAAGCAGGGGAGAGGGAAACAAACTCCGGAAGGTGGTGTGAGCTACATAGAGTGGTCGGAGGGAAGGAAAGTATACT CAGGAAGCGGAACAGATCCAGAAAGAACAGTGGAACTAGACTTCTTCGTGAAAGAAATTCCAGTTTTCGACCTCGAAGACTTGCTCAGAGCTTCTGCGGA AGTCCTTGGAAAAGGGAAAAACGGAAGCACCTACAAGGCAACTCTGGAATCGGGCTCTGTCGTCGCCGTCAAACGTCTGAGGAAAGTCAACGTCTTGCCA CATAAAGAATTCGTCCAGCAAATGCAGCTCCTCGGAAATCTCAAGCACCACAACCTTGCACCTGTCATCTCATTTTACTACTCTCCCGATCAGAAGCTTA TCATCTACGAATTCGTCCCCGGTGGAAACCTTCACGAATTGCTACACGAAAACAGAGGAATGGGAAGAATGCCGCTAGACTGGACGGCGAGGCTATCAAT AATCAAAGACATAGCCAAAGGACTAGCATATCTCCACACTTCACTCCCCTCCCACAGAGCTCCTCACGGCAACCTCAAATCCTCCAACGTCCTCGTCCAA AGGGAAGGACTAAACTACTACTGCAAGCTCACCGACTACGGCCTCCTCCCGCTCCTCCAATCCCAAAAGGTCTCCGAGCGGCTCGCCGTCGGGAGGTCGC CGGAGTACGGCCAGGGGGAGCGGCTGACCCACAAGGCCGACGTCTACTGCTTCGGGATCGTGCTGCTGGAAGCCATCACGGGTAAGATCCCCGACGATGG GCCACCGCCGCAGCAGAGGGATAAAGAAGGGACGACGTCGGTGGAGGATCTGTCCGGCTGGGTCCGGTCGGCGGTGAACAGTGACTGGTCGACGGATATA TTGGATTTGGAGATAATGCAGTCGAGGGAAGGGCACGGGGAGATGTTTCAGCTGACCGATTTGGCGTTGGAGTGTACCTGTGTGTTGCCGGAGAAGCGGC CGAAGATGGCGGAGGTTGTGAGGAGGATTGAGGAGATTGAGCAGAGAAGTAAATGA
AA sequence Show only first row Show all	>Lus10018255 pacid=23179378 polypeptide=Lus10018255 locus=Lus10018255.g ID=Lus10018255.BGIv1.0 annot-version=v1.0 MLCLIRFRKQGRGKQTPEGGVSYIEWSEGRKVYSGSGTDPERTVELDFFVKEIPVFDLEDLLRASAEVLGKGKNGSTYKATLESGSVVAVKRLRKVNVLP HKEFVQQMQLLGNLKHHNLAPVISFYYSPDQKLIIYEFVPGGNLHELLHENRGMGRMPLDWTARLSIIKDIAKGLAYLHTSLPSHRAPHGNLKSSNVLVQ REGLNYYCKLTDYGLLPLLQSQKVSERLAVGRSPEYGQGERLTHKADVYCFGIVLLEAITGKIPDDGPPPQQRDKEGTTSVEDLSGWVRSAVNSDWSTDI LDLEIMQSREGHGEMFQLTDLALECTCVLPEKRPKMAEVVRRIEEIEQRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	0	1
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	10.2	0.8149
AT5G67200			Leucine-rich repeat protein ki...		Lus10018254 [exp]	14.1	0.7494
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	14.4	0.7999
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	15.5	0.7640
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	22.5	0.8102
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	24.1	0.7944
AT3G55310			NAD(P)-binding Rossmann-fold s...		Lus10006695 [exp]	28.9	0.7690
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041043 [exp]	31.6	0.7670
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	36.2	0.7436
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	40.0	0.7735

Compare expression of checked genes

Lus10018255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.